Variant report

Variant	rs41272237
Chromosome Location	chr9:26995787-26995788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10283643	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1048949	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967595	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967624	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10967634	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967638	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967639	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967640	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967644	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11999015	0.82[ASN][1000 genomes]
rs12001845	0.82[ASN][1000 genomes]
rs12002068	0.82[ASN][1000 genomes]
rs12003612	0.82[ASN][1000 genomes]
rs12338678	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12338827	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12339063	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12345094	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12349359	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910832	0.86[EUR][1000 genomes]
rs16910834	0.82[EUR][1000 genomes]
rs17694121	0.82[ASN][1000 genomes]
rs17694140	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17694300	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17694306	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17694549	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17755887	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17755911	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17756221	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28525632	0.84[EUR][1000 genomes]
rs41271173	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41272239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55902149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59478807	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59757728	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61331313	0.82[ASN][1000 genomes]
rs7037860	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73433963	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73643117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73643119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73643120	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73643125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643126	0.89[AFR][1000 genomes]
rs73643128	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957000-27024000	Weak transcription	Esophagus	oesophagus
2	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:26974200-27023600	Weak transcription	Fetal Brain Female	brain
5	chr9:26976200-27003600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:26976600-26996800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:26976800-27017800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:26977000-26997000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:26977200-27019400	Weak transcription	NH-A	brain
10	chr9:26977400-26998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:26977800-26996800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:26977800-27026000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:26979400-27024000	Weak transcription	Small Intestine	intestine
14	chr9:26982800-27023800	Weak transcription	Lung	lung
15	chr9:26983600-27023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:26985200-26996600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:26985200-26997600	Weak transcription	Dnd41	blood
18	chr9:26985200-27011800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr9:26985200-27011800	Weak transcription	Colon Smooth Muscle	Colon
20	chr9:26985200-27015800	Weak transcription	Brain Angular Gyrus	brain
21	chr9:26985200-27016200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:26985200-27017400	Weak transcription	Brain Substantia Nigra	brain
23	chr9:26985200-27024000	Weak transcription	Right Ventricle	heart
24	chr9:26985200-27024000	Weak transcription	HSMM	muscle
25	chr9:26985200-27063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:26985400-26996200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr9:26985400-26997000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:26985400-27001000	Weak transcription	Brain Anterior Caudate	brain
29	chr9:26985400-27003400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr9:26985400-27004000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:26985400-27012200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr9:26985400-27012400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:26985400-27013000	Weak transcription	Brain Hippocampus Middle	brain
34	chr9:26985400-27015600	Weak transcription	Primary T cells from cord blood	blood
35	chr9:26985400-27015800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:26985400-27017400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:26985400-27017400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:26985400-27017800	Weak transcription	Fetal Thymus	thymus
39	chr9:26985400-27024000	Weak transcription	A549	lung
40	chr9:26985600-27024400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:26985800-26996800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr9:26985800-27018800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:26986000-27012200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:26986200-26997600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:26986600-27004000	Weak transcription	Colonic Mucosa	Colon
46	chr9:26986800-27016000	Weak transcription	Ovary	ovary
47	chr9:26987200-27017200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr9:26987200-27023800	Weak transcription	HSMMtube	muscle
49	chr9:26987400-27019000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:26987400-27024000	Weak transcription	Aorta	Aorta

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