Variant report

Variant	rs10967644
Chromosome Location	chr9:26986774-26986775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10217151	0.82[AFR][1000 genomes]
rs10283643	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1048949	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967595	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967624	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11999015	0.82[ASN][1000 genomes]
rs12001845	0.82[ASN][1000 genomes]
rs12002068	0.82[ASN][1000 genomes]
rs12003612	0.82[ASN][1000 genomes]
rs12338678	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12338827	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12339063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12339723	0.82[AFR][1000 genomes]
rs12345094	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12349359	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12350899	0.82[AFR][1000 genomes]
rs16910832	0.88[EUR][1000 genomes]
rs16910834	0.84[EUR][1000 genomes]
rs17694121	0.82[ASN][1000 genomes]
rs17694140	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17694300	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17694306	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17694549	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17755887	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17755911	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17756221	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28525632	0.86[EUR][1000 genomes]
rs41271173	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41272237	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41272239	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55902149	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59478807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59757728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61331313	0.82[ASN][1000 genomes]
rs7019249	0.82[AFR][1000 genomes]
rs7037860	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73433963	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73643117	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73643119	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73643120	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73643125	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73643128	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957000-27024000	Weak transcription	Esophagus	oesophagus
2	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:26969000-26991200	Weak transcription	NHDF-Ad	bronchial
5	chr9:26970800-26990000	Weak transcription	Spleen	Spleen
6	chr9:26972200-26995000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:26972800-26986800	Weak transcription	Aorta	Aorta
8	chr9:26972800-26990600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:26974200-27023600	Weak transcription	Fetal Brain Female	brain
10	chr9:26976200-27003600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:26976600-26996800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:26976800-26993000	Weak transcription	Osteobl	bone
13	chr9:26976800-27017800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:26977000-26997000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:26977200-27019400	Weak transcription	NH-A	brain
16	chr9:26977400-26992200	Weak transcription	HMEC	breast
17	chr9:26977400-26994400	Weak transcription	NHEK	skin
18	chr9:26977400-26998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:26977800-26996800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:26977800-27026000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:26978000-26989400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr9:26979400-26993200	Weak transcription	Gastric	stomach
23	chr9:26979400-27024000	Weak transcription	Small Intestine	intestine
24	chr9:26979600-26992600	Weak transcription	Brain Germinal Matrix	brain
25	chr9:26980200-26987800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:26980400-26989400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:26981000-26986800	Strong transcription	Ovary	ovary
28	chr9:26981000-26992800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:26981600-26986800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:26982800-26995200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr9:26982800-27023800	Weak transcription	Lung	lung
32	chr9:26983000-26987600	Strong transcription	Stomach Smooth Muscle	stomach
33	chr9:26983000-26987800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:26983000-26991200	Weak transcription	Fetal Intestine Small	intestine
35	chr9:26983200-26988000	Weak transcription	HUVEC	blood vessel
36	chr9:26983400-26986800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr9:26983600-27023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:26984200-26986800	Weak transcription	GM12878-XiMat	blood
39	chr9:26984200-26987200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:26984600-26987200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr9:26984600-26987600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:26985000-26987200	Strong transcription	HSMMtube	muscle
43	chr9:26985000-26992400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:26985200-26987600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr9:26985200-26988800	Weak transcription	Placenta	Placenta
46	chr9:26985200-26992000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr9:26985200-26993000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr9:26985200-26993200	Weak transcription	Fetal Heart	heart
49	chr9:26985200-26993800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:26985200-26994200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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