Variant report

Variant	rs17755820
Chromosome Location	chr9:26831118-26831119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10283643	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1048949	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10511793	1.00[CHB][hapmap]
rs10812492	1.00[CHB][hapmap]
rs10812500	1.00[CHB][hapmap]
rs10967593	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10967594	1.00[CHB][hapmap]
rs10967595	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10967624	1.00[CHB][hapmap]
rs10967625	1.00[CHB][hapmap]
rs10967634	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10967639	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10967640	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12001845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12003612	1.00[JPT][hapmap]
rs12338678	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12338827	0.85[EUR][1000 genomes]
rs12342005	1.00[CHB][hapmap]
rs12345094	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12349359	1.00[CHB][hapmap]
rs12352441	1.00[CHB][hapmap]
rs16910755	1.00[AMR][1000 genomes]
rs16910832	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16910834	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16910888	1.00[CHB][hapmap]
rs16910895	1.00[CHB][hapmap]
rs17694121	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17694140	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17694300	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17694306	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17694549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17755398	1.00[AMR][1000 genomes]
rs17755887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17755911	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17756221	1.00[JPT][hapmap]
rs17760378	1.00[JPT][hapmap]
rs41271173	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6475948	1.00[CHB][hapmap]
rs7037860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7039400	1.00[CHB][hapmap]
rs7040516	1.00[CHB][hapmap]
rs7871097	1.00[CHB][hapmap]
rs7871286	1.00[CHB][hapmap]
rs892570	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3373096	chr9:26825001-26848031	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26822600-26846200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:26829000-26833400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:26829000-26839400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:26829000-26839600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:26829000-26840200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:26829000-26840400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:26829200-26842200	Weak transcription	Left Ventricle	heart
9	chr9:26830200-26865400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:26830400-26833800	Weak transcription	HSMMtube	muscle

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