Variant report

Variant	rs16910755
Chromosome Location	chr9:26758414-26758415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26758275..26760056-chr9:26761242..26763572,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10283643	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs1048949	1.00[AMR][1000 genomes]
rs10967593	1.00[JPT][hapmap]
rs10967595	1.00[AMR][1000 genomes]
rs12001845	1.00[JPT][hapmap]
rs12003612	1.00[JPT][hapmap]
rs12338678	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs12345094	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17694121	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17694140	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17694300	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17694306	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17755398	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17755820	1.00[AMR][1000 genomes]
rs17755887	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17755911	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17760378	1.00[JPT][hapmap]
rs41271173	1.00[AMR][1000 genomes]
rs56772587	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892569	0.93[ASN][1000 genomes]
rs892570	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv892860	chr9:26704385-26789940	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv892861	chr9:26707333-26789940	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv466332	chr9:26709294-26783463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv613941	chr9:26709294-26783463	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv613942	chr9:26722736-26789975	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv466333	chr9:26728455-26789975	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv613943	chr9:26728455-26789975	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1033113	chr9:26737203-26793584	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1032172	chr9:26742409-26789626	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26755400-26759000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:26755600-26759000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:26756200-26758800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:26756400-26758600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:26756400-26759000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:26758000-26759400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:26758400-26758800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:26758400-26759400	Enhancers	HUES6 Cell Line	embryonic stem cell

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