Variant report

Variant	rs17755398
Chromosome Location	chr9:26767302-26767303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10283643	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs1048949	1.00[AMR][1000 genomes]
rs10967593	1.00[JPT][hapmap]
rs10967595	1.00[AMR][1000 genomes]
rs12001845	1.00[JPT][hapmap]
rs12003612	1.00[JPT][hapmap]
rs12338678	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs12345094	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16910755	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694121	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17694140	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17694300	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17694306	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17755820	1.00[AMR][1000 genomes]
rs17755887	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17755911	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17756221	1.00[JPT][hapmap]
rs17760378	1.00[JPT][hapmap]
rs41271173	1.00[AMR][1000 genomes]
rs56772587	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7037860	1.00[JPT][hapmap]
rs892569	0.87[ASN][1000 genomes]
rs892570	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv892860	chr9:26704385-26789940	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv892861	chr9:26707333-26789940	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv466332	chr9:26709294-26783463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv613941	chr9:26709294-26783463	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv613942	chr9:26722736-26789975	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv466333	chr9:26728455-26789975	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv613943	chr9:26728455-26789975	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1033113	chr9:26737203-26793584	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1032172	chr9:26742409-26789626	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26767200-26768400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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