Variant report

Variant	rs7857214
Chromosome Location	chr9:72827297-72827298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr9:72827000-72827379	A549	lung:	n/a	n/a

Variant related genes	Relation type
RPL24P8	TF binding region

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10116027	0.87[ASN][1000 genomes]
rs10125117	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1012992	0.87[ASN][1000 genomes]
rs1012993	0.87[ASN][1000 genomes]
rs10435957	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10732697	0.87[ASN][1000 genomes]
rs10746819	0.87[ASN][1000 genomes]
rs10780851	0.83[ASN][1000 genomes]
rs10780866	0.87[ASN][1000 genomes]
rs10780869	0.87[ASN][1000 genomes]
rs10780898	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10868741	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10868807	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10868808	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11142242	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142354	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11142356	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11142363	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11142367	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11142368	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11142370	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11142371	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11142373	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11142374	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1180078	0.94[ASN][1000 genomes]
rs1180079	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1180087	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1180098	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180101	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180102	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180103	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180104	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180105	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180106	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180107	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180112	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180114	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180115	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180117	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180118	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180120	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180122	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180124	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180125	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1180126	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1180128	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1180132	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1180133	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11998951	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12005666	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12006212	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12156606	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12236327	0.89[ASN][1000 genomes]
rs12377766	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12379485	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12380844	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1887452	0.92[ASN][1000 genomes]
rs1927091	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927092	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1927093	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927098	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1927120	0.87[ASN][1000 genomes]
rs1927121	0.87[ASN][1000 genomes]
rs1927122	0.87[ASN][1000 genomes]
rs1927125	0.91[ASN][1000 genomes]
rs1927126	0.91[ASN][1000 genomes]
rs1927127	0.90[ASN][1000 genomes]
rs2026137	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2148868	0.87[ASN][1000 genomes]
rs2182731	0.89[ASN][1000 genomes]
rs2182740	0.87[ASN][1000 genomes]
rs2183362	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2309632	0.89[ASN][1000 genomes]
rs2309636	0.91[ASN][1000 genomes]
rs2479032	0.81[AMR][1000 genomes]
rs2768644	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2768645	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2768649	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2773362	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2871291	0.81[ASN][1000 genomes]
rs2871293	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2871296	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4279667	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4322072	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4357361	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4378025	0.86[ASN][1000 genomes]
rs4449855	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4531114	0.92[ASN][1000 genomes]
rs4744591	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744984	0.83[ASN][1000 genomes]
rs4744986	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4744994	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744995	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744997	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744998	0.86[ASN][1000 genomes]
rs56059804	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56345723	0.88[ASN][1000 genomes]
rs58720670	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58879007	0.81[ASN][1000 genomes]
rs58881692	0.89[ASN][1000 genomes]
rs59013777	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61531415	0.85[AMR][1000 genomes]
rs6560060	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6560129	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs66658020	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7034322	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7041843	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73454795	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7852005	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7854735	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856528	0.83[ASN][1000 genomes]
rs7857292	0.91[ASN][1000 genomes]
rs7858389	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7858907	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7858988	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7867727	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7868564	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7875514	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8181178	0.90[ASN][1000 genomes]
rs8181179	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs943536	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs943539	0.92[ASN][1000 genomes]
rs9696790	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72793000-72842600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72809600-72837800	Weak transcription	NH-A	brain
3	chr9:72810800-72827800	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:72820800-72835400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:72821000-72827400	Weak transcription	HSMM	muscle
6	chr9:72821200-72827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:72821200-72828200	Weak transcription	HSMMtube	muscle
8	chr9:72821200-72844800	Weak transcription	HMEC	breast
9	chr9:72821400-72827600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:72821400-72829800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:72821400-72830200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:72821400-72832000	Weak transcription	NHEK	skin
13	chr9:72825600-72833200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:72826000-72827800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:72826000-72833200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:72826800-72827800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:72827000-72827400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:72827000-72827400	ZNF genes & repeats	Colonic Mucosa	Colon
19	chr9:72827000-72827800	ZNF genes & repeats	Lung	lung
20	chr9:72827000-72828000	ZNF genes & repeats	Fetal Stomach	stomach
21	chr9:72827000-72828200	ZNF genes & repeats	Aorta	Aorta
22	chr9:72827000-72828800	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr9:72827200-72827600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:72827200-72828000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:72827200-72828000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
26	chr9:72827200-72828000	ZNF genes & repeats	Left Ventricle	heart
27	chr9:72827200-72828000	ZNF genes & repeats	Pancreas	Pancrea
28	chr9:72827200-72828200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:72827200-72828200	ZNF genes & repeats	Liver	Liver
30	chr9:72827200-72828200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr9:72827200-72828200	ZNF genes & repeats	Fetal Lung	lung
32	chr9:72827200-72828400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
33	chr9:72827200-72828800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr9:72827200-72830800	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr9:72827200-72832000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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