Variant report

Variant	rs61531415
Chromosome Location	chr9:72910279-72910280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10125117	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10435957	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10868741	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10868807	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10868808	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1112937	0.89[AFR][1000 genomes]
rs11142242	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11142354	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142356	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142363	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11142367	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11142368	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11142370	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11142371	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11142373	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11142374	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1180078	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1180079	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1180087	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1180098	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1180101	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1180102	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1180103	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1180104	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1180105	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1180106	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1180107	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1180112	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180114	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180115	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180117	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180118	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180120	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180122	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180124	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180125	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1180126	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1180127	0.87[AFR][1000 genomes]
rs1180128	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1180132	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1180133	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11998951	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12005666	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12006212	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12156606	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12377766	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12379485	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12380844	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1887452	0.81[EUR][1000 genomes]
rs1927091	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1927092	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1927093	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1927098	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1927126	0.81[EUR][1000 genomes]
rs1927127	0.81[EUR][1000 genomes]
rs2026137	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2183362	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2309632	0.81[EUR][1000 genomes]
rs2309636	0.80[AMR][1000 genomes]
rs2479032	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2768644	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2768645	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2768649	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2773362	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2871293	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2871296	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4279667	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4322072	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4357361	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4449855	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744591	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744986	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744994	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744995	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744997	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744998	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56059804	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58720670	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58879007	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58881692	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59013777	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6560060	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6560129	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66658020	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs68171482	0.87[AFR][1000 genomes]
rs7034322	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7041843	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7047789	0.83[AFR][1000 genomes]
rs73454795	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7852005	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7854735	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7857214	0.85[AMR][1000 genomes]
rs7857292	0.81[EUR][1000 genomes]
rs7858389	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7858907	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7858988	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7867727	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7868564	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7875514	0.86[AMR][1000 genomes]
rs8181178	0.88[AMR][1000 genomes]
rs8181179	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs943536	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs943539	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72876400-72916800	Weak transcription	Colonic Mucosa	Colon
3	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
4	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
6	chr9:72877000-72939800	Weak transcription	Gastric	stomach
7	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:72885400-72916800	Weak transcription	Esophagus	oesophagus
12	chr9:72887600-72916800	Weak transcription	Aorta	Aorta
13	chr9:72891000-72911000	Strong transcription	HSMM	muscle
14	chr9:72891000-72923400	Strong transcription	Dnd41	blood
15	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr9:72894600-72917000	Weak transcription	Pancreas	Pancrea
17	chr9:72896200-72916800	Weak transcription	Right Ventricle	heart
18	chr9:72897800-72912800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr9:72898200-72922200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:72898600-72912800	Weak transcription	Fetal Brain Male	brain
21	chr9:72899000-72914600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:72899200-72914200	Weak transcription	NHEK	skin
23	chr9:72899600-72913000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr9:72900600-72916800	Weak transcription	Lung	lung
25	chr9:72900600-72916800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:72900600-72924000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:72900600-72939400	Weak transcription	Small Intestine	intestine
28	chr9:72900600-72942600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:72900800-72916800	Weak transcription	Brain Substantia Nigra	brain
30	chr9:72901000-72912800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:72902200-72915000	Weak transcription	Left Ventricle	heart
32	chr9:72902600-72910800	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr9:72903000-72930400	Weak transcription	Brain Angular Gyrus	brain
34	chr9:72904200-72912800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:72904800-72911200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:72905600-72910600	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr9:72905600-72911000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:72906200-72911800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:72906600-72912200	Weak transcription	Osteobl	bone
40	chr9:72906800-72912800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr9:72906800-72916800	Weak transcription	Thymus	Thymus
42	chr9:72906800-72919000	Weak transcription	Ovary	ovary
43	chr9:72907000-72912000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:72907000-72912600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:72907000-72912600	Weak transcription	HUVEC	blood vessel
46	chr9:72907000-72912800	Weak transcription	Fetal Thymus	thymus
47	chr9:72907000-72912800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr9:72907000-72913000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:72907000-72913000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr9:72907000-72914400	Weak transcription	HSMMtube	muscle

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