Variant report

Variant	rs785907
Chromosome Location	chr9:79121085-79121086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79118137..79121617-chr9:79133678..79136692,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1057419	0.90[CHB][hapmap]
rs11144870	0.80[MEX][hapmap]
rs2480213	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4532668	0.90[CHB][hapmap]
rs502417	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs512269	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs513301	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs602075	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs688268	0.83[EUR][1000 genomes]
rs785914	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs785915	0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs785916	0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs785928	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv437089	chr9:79116975-79139590	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
2	chr9:79114400-79122800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:79115000-79122600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:79116600-79121200	Weak transcription	Esophagus	oesophagus
5	chr9:79118400-79122800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:79118600-79122000	Weak transcription	Stomach Mucosa	stomach
7	chr9:79118600-79122600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:79118600-79123200	Strong transcription	Osteobl	bone
9	chr9:79118600-79126200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:79118600-79134200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:79118800-79121200	Weak transcription	Colonic Mucosa	Colon
12	chr9:79118800-79121400	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr9:79118800-79121400	Weak transcription	NH-A	brain
14	chr9:79118800-79124600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:79118800-79125200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:79118800-79125200	Weak transcription	NHDF-Ad	bronchial
17	chr9:79118800-79127600	Weak transcription	HSMMtube	muscle
18	chr9:79118800-79136400	Weak transcription	Gastric	stomach
19	chr9:79118800-79145800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr9:79119000-79122400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr9:79119000-79123000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:79119000-79123200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:79119000-79125200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:79119200-79121400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:79119200-79124800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:79119200-79125200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:79119200-79125200	Weak transcription	NHLF	lung
28	chr9:79119200-79127800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr9:79119200-79134000	Weak transcription	Fetal Intestine Small	intestine
30	chr9:79119600-79121200	Weak transcription	Primary T cells from cord blood	blood
31	chr9:79119600-79122600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:79119800-79121600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:79119800-79123800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:79119800-79130400	Weak transcription	Primary B cells from cord blood	blood
35	chr9:79119800-79132200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr9:79120000-79121400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:79120000-79127600	Weak transcription	HMEC	breast
38	chr9:79120400-79124200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr9:79120400-79134000	Weak transcription	Fetal Intestine Large	intestine
40	chr9:79120400-79145200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:79120600-79128000	Weak transcription	HSMM	muscle
42	chr9:79120600-79131000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:79120800-79131200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr9:79120800-79131400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:79121000-79127600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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