Variant report

Variant	rs7859638
Chromosome Location	chr9:71533367-71533368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10117198	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10119540	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1056265	0.86[ASN][1000 genomes]
rs10746973	0.90[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.90[ASN][1000 genomes]
rs10746974	0.82[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10781276	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10869623	0.83[ASN][1000 genomes]
rs11144468	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11144474	0.90[JPT][hapmap]
rs11144496	0.91[JPT][hapmap]
rs12349586	0.95[JPT][hapmap];0.81[MEX][hapmap];0.83[ASN][1000 genomes]
rs12684346	0.82[CHB][hapmap];0.84[CHD][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs12686613	0.84[EUR][1000 genomes]
rs12686693	0.82[CHB][hapmap];0.86[CHD][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs17058884	0.82[CHB][hapmap];0.86[CHD][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs17081071	0.82[CHB][hapmap];0.94[EUR][1000 genomes]
rs2039625	0.90[TSI][hapmap]
rs4745359	0.84[EUR][1000 genomes]
rs61196668	0.84[EUR][1000 genomes]
rs62569165	0.80[ASN][1000 genomes]
rs6560444	0.82[GIH][hapmap]
rs7022925	0.99[ASN][1000 genomes]
rs7852633	0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv466393	chr9:71453443-71704827	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv614547	chr9:71453443-71704827	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv614549	chr9:71506459-71659280	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1051798	chr9:71511805-71792032	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
18	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71510400-71576200	Weak transcription	Stomach Mucosa	stomach
2	chr9:71512200-71548800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:71514200-71553600	Weak transcription	Aorta	Aorta
4	chr9:71514200-71557800	Weak transcription	Lung	lung
5	chr9:71519400-71573000	Weak transcription	Gastric	stomach
6	chr9:71520400-71535400	Weak transcription	Fetal Intestine Small	intestine
7	chr9:71520600-71534000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:71521000-71534600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:71521200-71533800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:71528000-71542200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:71528200-71537600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:71528400-71534400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:71528400-71535000	Weak transcription	Fetal Kidney	kidney
14	chr9:71530000-71534200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr9:71530000-71538400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:71530400-71537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:71530400-71542000	Weak transcription	K562	blood
18	chr9:71530600-71535000	Weak transcription	Right Atrium	heart
19	chr9:71531000-71534600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:71531800-71534000	Strong transcription	Fetal Intestine Large	intestine
21	chr9:71532000-71533600	Strong transcription	Primary B cells from cord blood	blood
22	chr9:71532000-71533600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr9:71532000-71535200	Genic enhancers	Primary B cells from peripheral blood	blood
24	chr9:71532400-71533600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:71532400-71533800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr9:71532400-71535000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr9:71532600-71533600	Enhancers	H9 Cell Line	embryonic stem cell
28	chr9:71532800-71534800	Weak transcription	Left Ventricle	heart
29	chr9:71532800-71535000	Weak transcription	Fetal Heart	heart
30	chr9:71532800-71556800	Weak transcription	Right Ventricle	heart
31	chr9:71533000-71533600	Strong transcription	HepG2	liver
32	chr9:71533200-71533600	Flanking Active TSS	GM12878-XiMat	blood
33	chr9:71533200-71536200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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