Variant report

Variant	rs7861545
Chromosome Location	chr9:8319526-8319527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1155270	1.00[ASN][1000 genomes]
rs1155271	1.00[ASN][1000 genomes]
rs12340202	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347347	1.00[ASN][1000 genomes]
rs12351926	0.94[ASN][1000 genomes]
rs12352139	1.00[ASN][1000 genomes]
rs12352141	1.00[ASN][1000 genomes]
rs13439920	1.00[ASN][1000 genomes]
rs13440359	0.94[ASN][1000 genomes]
rs13440396	1.00[ASN][1000 genomes]
rs28554480	1.00[ASN][1000 genomes]
rs3858061	0.94[ASN][1000 genomes]
rs3953279	0.94[ASN][1000 genomes]
rs4370592	0.94[ASN][1000 genomes]
rs57945752	1.00[ASN][1000 genomes]
rs59010082	1.00[ASN][1000 genomes]
rs59784984	1.00[ASN][1000 genomes]
rs60712800	1.00[ASN][1000 genomes]
rs7468719	1.00[ASN][1000 genomes]
rs7868532	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs996924	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8310800-8321800	Weak transcription	Fetal Brain Female	brain
2	chr9:8310800-8323000	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8311000-8319600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:8311200-8322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:8312200-8322600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain
7	chr9:8312800-8322000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:8313800-8329400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:8314400-8319800	Weak transcription	Fetal Lung	lung
10	chr9:8314600-8321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:8315400-8323000	Weak transcription	Brain Anterior Caudate	brain
12	chr9:8316000-8329600	Weak transcription	Ovary	ovary
13	chr9:8318200-8329000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:8319000-8322400	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:8319000-8322800	Weak transcription	Fetal Brain Male	brain
16	chr9:8319200-8322400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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