Variant report

Variant	rs1155270
Chromosome Location	chr9:8311859-8311860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10124014	1.00[CHB][hapmap]
rs10511492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10977129	1.00[CEU][hapmap]
rs10977164	1.00[CEU][hapmap]
rs1155271	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12342801	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12343024	1.00[CHB][hapmap]
rs12347347	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12351926	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12352139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439920	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13440359	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13440396	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1500319	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16927608	1.00[JPT][hapmap]
rs16927610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17559269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17559283	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28554480	1.00[ASN][1000 genomes]
rs3858061	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3953279	0.94[ASN][1000 genomes]
rs4370592	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57945752	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59010082	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59784984	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60712800	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7468719	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7861545	1.00[ASN][1000 genomes]
rs7867463	1.00[CHB][hapmap]
rs7868532	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs996924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
4	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	esv3337718	chr9:8301001-8318939	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8309200-8315600	Weak transcription	Fetal Kidney	kidney
2	chr9:8310800-8313000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:8310800-8318600	Weak transcription	Fetal Brain Male	brain
4	chr9:8310800-8321800	Weak transcription	Fetal Brain Female	brain
5	chr9:8310800-8323000	Weak transcription	Brain Germinal Matrix	brain
6	chr9:8311000-8312800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:8311000-8313200	Weak transcription	Fetal Lung	lung
8	chr9:8311000-8319600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:8311200-8315200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:8311200-8318600	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:8311200-8322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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