Variant report

Variant	rs13440396
Chromosome Location	chr9:8310322-8310323
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10124014	1.00[CHB][hapmap]
rs10511492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1155270	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1155271	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12340202	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12342801	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12343024	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12347347	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12351926	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12352139	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12352141	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13439920	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1500319	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16927608	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16927610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17559269	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17559283	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28554480	1.00[ASN][1000 genomes]
rs3858061	0.94[ASN][1000 genomes]
rs3953279	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4370592	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57945752	1.00[ASN][1000 genomes]
rs59010082	1.00[ASN][1000 genomes]
rs59784984	1.00[ASN][1000 genomes]
rs60712800	1.00[ASN][1000 genomes]
rs7468719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861545	1.00[ASN][1000 genomes]
rs7867463	1.00[CHB][hapmap]
rs7868532	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs996924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
4	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	esv2762787	chr9:8282283-8310704	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3337718	chr9:8301001-8318939	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8309200-8315600	Weak transcription	Fetal Kidney	kidney
2	chr9:8310200-8310800	ZNF genes & repeats	Fetal Brain Male	brain

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