Variant report

Variant	rs7873646
Chromosome Location	chr9:95350673-95350674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10115937	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10120210	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10120292	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10435919	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1111047	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2007245	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2131918	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2296668	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744142	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479424	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6479427	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7043114	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7864757	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9886781	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9969804	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95347600-95365800	Weak transcription	Thymus	Thymus
2	chr9:95347800-95364000	Weak transcription	Left Ventricle	heart
3	chr9:95348800-95355200	Weak transcription	Aorta	Aorta
4	chr9:95349200-95353400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:95350400-95351800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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