Variant report

Variant	rs9886781
Chromosome Location	chr9:95373251-95373252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95371374..95373769-chr9:95381769..95384696,2	K562	blood:
2	chr9:95373177..95375110-chr9:95377702..95380287,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10115937	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10120210	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10120292	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10121218	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10125510	1.00[YRI][hapmap]
rs1015791	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10435919	1.00[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10739929	0.87[AMR][1000 genomes]
rs10761159	1.00[YRI][hapmap]
rs10761167	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10761168	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761169	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761170	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821013	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992415	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992439	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1111047	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12554627	0.89[ASW][hapmap]
rs1536423	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs2007245	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2018717	0.81[MEX][hapmap];0.81[TSI][hapmap]
rs2131918	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2296668	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2761680	1.00[YRI][hapmap]
rs4266708	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744142	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479421	1.00[YRI][hapmap]
rs6479424	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479427	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479429	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7021624	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7043114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862310	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7863755	0.81[AMR][1000 genomes]
rs7864453	1.00[YRI][hapmap]
rs7864757	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7873646	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7875225	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs912260	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs912262	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9969804	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs9886781	IPPK	cis	cerebellum	SCAN
rs9886781	CENPP	cis	parietal	SCAN
rs9886781	ZNF484	cis	parietal	SCAN
rs9886781	ANKRD19	cis	parietal	SCAN
rs9886781	CENPP	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95363400-95374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95363400-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:95366400-95375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:95366600-95373600	Weak transcription	Thymus	Thymus
5	chr9:95367400-95373800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:95367400-95380600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:95369400-95373800	Enhancers	NHDF-Ad	bronchial
8	chr9:95369800-95374200	Weak transcription	Liver	Liver
9	chr9:95369800-95374200	Weak transcription	GM12878-XiMat	blood
10	chr9:95370200-95376200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:95370600-95394000	Weak transcription	Psoas Muscle	Psoas
12	chr9:95370800-95373800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:95370800-95374200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:95370800-95377800	Weak transcription	Fetal Brain Male	brain
15	chr9:95370800-95380400	Weak transcription	Fetal Heart	heart
16	chr9:95371000-95373600	Enhancers	Ovary	ovary
17	chr9:95371000-95373800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr9:95371200-95375200	Weak transcription	NH-A	brain
19	chr9:95371200-95379800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:95371400-95373400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:95371400-95373800	Genic enhancers	NHLF	lung
22	chr9:95371400-95398200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr9:95371600-95373800	Weak transcription	Osteobl	bone
24	chr9:95371600-95374000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:95371800-95373400	Weak transcription	Right Ventricle	heart
26	chr9:95371800-95374000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:95371800-95374000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:95371800-95374000	Weak transcription	Pancreas	Pancrea
29	chr9:95371800-95374200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:95371800-95376000	Weak transcription	Brain Angular Gyrus	brain
31	chr9:95371800-95377000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:95371800-95377400	Weak transcription	Fetal Kidney	kidney
33	chr9:95371800-95377600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr9:95371800-95379800	Weak transcription	Stomach Mucosa	stomach
35	chr9:95371800-95382400	Weak transcription	Right Atrium	heart
36	chr9:95371800-95399000	Weak transcription	Aorta	Aorta
37	chr9:95371800-95407400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr9:95372000-95373400	Weak transcription	Colon Smooth Muscle	Colon
39	chr9:95372000-95373600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr9:95372000-95374000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr9:95372000-95374000	Weak transcription	Colonic Mucosa	Colon
42	chr9:95372000-95374200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr9:95372000-95380200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:95372000-95394200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:95372200-95373800	Weak transcription	HepG2	liver
46	chr9:95372200-95374000	Weak transcription	Primary B cells from cord blood	blood
47	chr9:95372200-95375400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:95372200-95380400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:95372400-95373800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr9:95372400-95374400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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