Variant report

Variant	rs10992439
Chromosome Location	chr9:95495134-95495135
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95487457..95489961-chr9:95493403..95495209,2	MCF-7	breast:
2	chr9:95495102..95497294-chr9:95526257..95528893,3	K562	blood:
3	chr9:95483929..95486078-chr9:95495007..95497382,2	MCF-7	breast:
4	chr9:95494848..95496493-chr9:95528400..95531111,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10117377	0.92[EUR][1000 genomes]
rs10121218	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1015791	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10435919	0.83[CEU][hapmap]
rs10739929	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10761167	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761168	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761169	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761170	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821013	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992415	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1111047	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12554627	0.90[JPT][hapmap]
rs1536423	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs2018717	0.90[JPT][hapmap]
rs2131918	0.83[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs4266708	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744142	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744144	0.83[EUR][1000 genomes]
rs6479424	0.83[CEU][hapmap]
rs6479427	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043114	0.87[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7862310	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7864757	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7875225	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs912260	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886781	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9969804	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95475600-95499200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:95479200-95498200	Weak transcription	Stomach Mucosa	stomach
3	chr9:95482600-95497800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:95482600-95498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:95482800-95499400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:95483400-95497800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:95484200-95498000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:95484600-95499400	Weak transcription	Osteobl	bone
9	chr9:95484800-95501800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:95485600-95511600	Weak transcription	Aorta	Aorta
11	chr9:95487400-95497200	Weak transcription	Psoas Muscle	Psoas
12	chr9:95489000-95497200	Weak transcription	HMEC	breast
13	chr9:95489200-95498000	Weak transcription	K562	blood
14	chr9:95489800-95499000	Weak transcription	HSMMtube	muscle
15	chr9:95490000-95497000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:95490000-95498000	Weak transcription	HSMM	muscle
17	chr9:95490000-95498000	Weak transcription	HUVEC	blood vessel
18	chr9:95490000-95498200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:95490000-95507400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:95490400-95501400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr9:95490600-95502200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:95490800-95498200	Weak transcription	NHDF-Ad	bronchial
23	chr9:95491200-95496400	Weak transcription	A549	lung
24	chr9:95491200-95499800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr9:95491200-95503000	Weak transcription	Fetal Kidney	kidney
26	chr9:95491400-95497000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:95491400-95497200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:95491400-95497400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr9:95491400-95498000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:95491400-95498000	Weak transcription	NHLF	lung
31	chr9:95491400-95498400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:95491400-95499000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:95491400-95499200	Weak transcription	Small Intestine	intestine
34	chr9:95491400-95499400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:95491400-95501400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr9:95491400-95501800	Weak transcription	Liver	Liver
37	chr9:95491400-95507600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr9:95491600-95497000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:95491600-95497000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:95491600-95497000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr9:95491600-95497000	Weak transcription	Fetal Intestine Large	intestine
42	chr9:95491600-95498000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr9:95491600-95498400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr9:95491600-95499000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr9:95491600-95499800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:95491600-95500000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:95491600-95500400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr9:95491600-95502400	Weak transcription	Primary T cells from cord blood	blood
49	chr9:95491600-95503000	Weak transcription	Fetal Lung	lung
50	chr9:95491800-95496600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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