Variant report

Variant	rs10761168
Chromosome Location	chr9:95505560-95505561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95497607..95506128-chr9:95524589..95529183,18	MCF-7	breast:
2	chr9:95496063..95498549-chr9:95505321..95508178,2	K562	blood:
3	chr9:95489432..95492174-chr9:95505012..95506528,2	K562	blood:
4	chr9:95504029..95507342-chr9:95507599..95511465,3	MCF-7	breast:
5	chr9:95497520..95500210-chr9:95502956..95506656,3	MCF-7	breast:
6	chr9:95504668..95516688-chr9:95523327..95528935,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10117377	0.91[EUR][1000 genomes]
rs10121218	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1015791	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10739929	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10761167	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761169	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761170	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821013	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992415	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992439	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1111047	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2131918	0.82[AMR][1000 genomes]
rs4266708	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744142	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4744144	0.83[EUR][1000 genomes]
rs6479427	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6479429	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7021624	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7043114	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7862310	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7864757	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7875225	0.91[EUR][1000 genomes]
rs912260	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs912262	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886781	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9969804	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95485600-95511600	Weak transcription	Aorta	Aorta
2	chr9:95490000-95507400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:95491400-95507600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:95491800-95507600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:95496800-95506600	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:95497400-95506200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:95498600-95510200	Weak transcription	Hela-S3	cervix
8	chr9:95498800-95507400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:95500200-95508000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:95501400-95508400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:95501800-95507600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:95502000-95511200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:95502200-95507400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:95502200-95507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:95502200-95511200	Weak transcription	Fetal Brain Male	brain
16	chr9:95502200-95511600	Weak transcription	Fetal Brain Female	brain
17	chr9:95502400-95507800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:95502400-95516400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:95502600-95506600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:95502600-95507400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:95503200-95507400	Weak transcription	Colonic Mucosa	Colon
22	chr9:95503400-95505600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:95503400-95506200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:95503400-95506400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr9:95503400-95507400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:95503400-95507400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:95503400-95507400	Weak transcription	Fetal Stomach	stomach
28	chr9:95503400-95507600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:95503400-95507600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:95503400-95507600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:95503400-95507600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:95503400-95507600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:95503400-95507600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:95503400-95507600	Weak transcription	Esophagus	oesophagus
35	chr9:95503400-95507600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr9:95503400-95507600	Weak transcription	Gastric	stomach
37	chr9:95503400-95507600	Weak transcription	Thymus	Thymus
38	chr9:95503400-95508800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:95503400-95508800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr9:95503400-95508800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr9:95503400-95508800	Weak transcription	Fetal Kidney	kidney
42	chr9:95503400-95509000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:95503400-95511600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:95503400-95518000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:95503600-95505600	Enhancers	Fetal Heart	heart
46	chr9:95503600-95506000	Weak transcription	Lung	lung
47	chr9:95503600-95506000	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr9:95503600-95506200	Weak transcription	Left Ventricle	heart
49	chr9:95503600-95506200	Weak transcription	Ovary	ovary
50	chr9:95503600-95506200	Weak transcription	Right Atrium	heart

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