Variant report

Variant	rs1015791
Chromosome Location	chr9:95554171-95554172
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95492835..95493383-chr9:95554018..95554646,2	MCF-7	breast:
2	chr9:95478444..95479282-chr9:95553871..95554503,2	MCF-7	breast:
3	chr9:95548519..95551423-chr9:95551697..95555504,3	K562	blood:
4	chr9:95548536..95551423-chr9:95551697..95554622,2	K562	blood:
5	chr9:95490525..95493250-chr9:95553271..95556888,4	MCF-7	breast:
6	chr9:95431446..95434360-chr9:95553227..95554835,2	K562	blood:
7	chr9:95477589..95479745-chr9:95552939..95554698,2	K562	blood:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10117377	0.95[EUR][1000 genomes]
rs10121218	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10739929	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761167	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10761168	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10761169	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10761170	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10821013	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10992415	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992439	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1111047	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12554627	0.89[ASN][1000 genomes]
rs2018717	0.89[ASN][1000 genomes]
rs4266708	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744142	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744144	0.81[EUR][1000 genomes]
rs6479427	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479429	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7021624	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7043114	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7862310	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7864757	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7875225	0.94[EUR][1000 genomes]
rs912260	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs912262	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9886781	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9969804	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv982595	chr9:95551536-95561640	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95553200-95556600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:95553600-95557400	Weak transcription	Liver	Liver

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