Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:95548519..95551423-chr9:95551697..95555504,3	K562	blood:
2	chr9:95548536..95551423-chr9:95551697..95554622,2	K562	blood:
3	chr9:95478553..95479822-chr9:95552363..95553622,4	MCF-7	breast:
4	chr9:95262989..95265065-chr9:95551736..95554056,2	MCF-7	breast:
5	chr9:95488503..95490523-chr9:95550611..95553154,2	MCF-7	breast:
6	chr9:95525165..95529310-chr9:95549740..95553522,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10117377	0.93[EUR][1000 genomes]
rs10121218	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1015791	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761167	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10761168	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10761169	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10761170	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10821013	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992415	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992439	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1111047	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12554627	0.84[ASN][1000 genomes]
rs2018717	0.84[ASN][1000 genomes]
rs4266708	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744142	0.85[AMR][1000 genomes]
rs6479427	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6479429	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7021624	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7043114	0.85[AMR][1000 genomes]
rs7862310	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7864757	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7875225	0.92[EUR][1000 genomes]
rs912260	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs912262	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9886781	0.87[AMR][1000 genomes]
rs9969804	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv982595	chr9:95551536-95561640	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95546000-95553000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:95546000-95553000	Weak transcription	NHEK	skin
4	chr9:95552000-95553600	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search: