Variant report

Variant	rs7043114
Chromosome Location	chr9:95387983-95387984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95386831..95389535-chr9:95429656..95431675,4	MCF-7	breast:
2	chr9:95086628..95088648-chr9:95386149..95388394,2	MCF-7	breast:
3	chr9:95380052..95382753-chr9:95387643..95389983,2	MCF-7	breast:
4	chr9:95379880..95382620-chr9:95387300..95389361,2	MCF-7	breast:
5	chr9:95387821..95390648-chr9:95431903..95434432,2	MCF-7	breast:
6	chr9:95378627..95381592-chr9:95387213..95389883,2	K562	blood:
7	chr9:95387784..95389622-chr9:95394276..95396366,2	K562	blood:
8	chr9:95384797..95388676-chr9:95391672..95394048,3	MCF-7	breast:
9	chr9:95387244..95389622-chr9:95392368..95395776,3	K562	blood:
10	chr9:95086508..95089253-chr9:95386356..95389739,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000188312	Chromatin interaction
ENSG00000127080	Chromatin interaction
ENSG00000198000	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10115937	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10120210	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10120292	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10121218	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1015791	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10435919	0.96[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10739929	0.85[AMR][1000 genomes]
rs10761167	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10761168	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761169	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761170	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821013	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992415	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992439	0.87[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1111047	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12554627	0.89[ASW][hapmap]
rs1536423	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap]
rs17380657	1.00[ASW][hapmap]
rs2007245	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2018717	0.81[MEX][hapmap];0.81[TSI][hapmap]
rs2131918	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2296668	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4266708	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479424	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6479427	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479429	0.89[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7021624	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7862310	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7863755	0.80[AMR][1000 genomes]
rs7864757	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7873646	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7875225	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs912260	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs912262	1.00[ASW][hapmap];0.89[CEU][hapmap];0.89[CHB][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9886781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969804	0.96[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7043114	ANKRD19	cis	parietal	SCAN
rs7043114	CENPP	cis	parietal	SCAN
rs7043114	CENPP	cis	cerebellum	SCAN
rs7043114	ZNF484	cis	parietal	SCAN
rs7043114	IPPK	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95363400-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:95370600-95394000	Weak transcription	Psoas Muscle	Psoas
3	chr9:95371400-95398200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:95371800-95399000	Weak transcription	Aorta	Aorta
5	chr9:95371800-95407400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:95372000-95394200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr9:95373200-95388000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:95373200-95399200	Weak transcription	Small Intestine	intestine
10	chr9:95374000-95394000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:95375200-95405000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:95375400-95403000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:95377600-95388000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:95378200-95393800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:95378200-95394000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:95378200-95394000	Weak transcription	Brain Substantia Nigra	brain
17	chr9:95378200-95394200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:95378200-95403600	Weak transcription	Fetal Brain Male	brain
19	chr9:95378400-95394000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:95378800-95393800	Weak transcription	Fetal Kidney	kidney
21	chr9:95378800-95394000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:95379600-95394400	Weak transcription	NHDF-Ad	bronchial
23	chr9:95380000-95397200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:95380800-95393800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:95380800-95400600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
27	chr9:95381000-95393800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr9:95381400-95402800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr9:95381600-95390400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:95381600-95396000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:95381800-95393800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr9:95382000-95389800	Weak transcription	K562	blood
33	chr9:95382000-95394600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:95382200-95393800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr9:95382400-95392200	Weak transcription	Brain Anterior Caudate	brain
36	chr9:95382600-95393800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:95382800-95392000	Weak transcription	NHLF	lung
38	chr9:95382800-95393200	Weak transcription	Right Ventricle	heart
39	chr9:95382800-95393800	Weak transcription	Brain Angular Gyrus	brain
40	chr9:95382800-95393800	Weak transcription	Pancreas	Pancrea
41	chr9:95382800-95394000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr9:95382800-95394000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:95382800-95394400	Weak transcription	Colonic Mucosa	Colon
44	chr9:95382800-95397000	Weak transcription	Fetal Heart	heart
45	chr9:95383000-95393600	Weak transcription	Spleen	Spleen
46	chr9:95383000-95395600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:95383200-95390000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:95383200-95392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:95383200-95393800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:95383200-95394200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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