Variant report

Variant	rs7874710
Chromosome Location	chr9:103101366-103101367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103090943..103094053-chr9:103097968..103101444,3	MCF-7	breast:
2	chr9:103092319..103094563-chr9:103099317..103101816,2	MCF-7	breast:
3	chr9:103087811..103094429-chr9:103096062..103101866,9	K562	blood:
4	chr9:103098288..103101964-chr9:103131665..103135949,3	K562	blood:
5	chr9:103099398..103101618-chr9:103114374..103116434,2	MCF-7	breast:
6	chr9:103100588..103103062-chr9:103287434..103290321,2	K562	blood:

Variant related genes	Relation type
ENSG00000136891	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10117799	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10118398	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10118701	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10123866	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10123913	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10124133	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10124893	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10819759	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10819761	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10819762	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10819764	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10819767	0.88[EUR][1000 genomes]
rs10989064	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10989067	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10989070	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11789196	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12684939	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2026999	0.87[EUR][1000 genomes]
rs2210498	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2417084	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2417176	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28464821	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4237195	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4742782	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4742784	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743393	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743394	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743395	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4743396	0.87[EUR][1000 genomes]
rs5029342	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59242794	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479008	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7025938	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7035619	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7047694	0.86[EUR][1000 genomes]
rs7472	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7852189	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7854693	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9299338	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9775014	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7874710	TEX10	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
2	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:103057600-103112600	Weak transcription	Fetal Brain Male	brain
4	chr9:103063800-103106000	Weak transcription	Esophagus	oesophagus
5	chr9:103064800-103104200	Weak transcription	Right Ventricle	heart
6	chr9:103065000-103114200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:103066200-103112600	Weak transcription	Pancreas	Pancrea
8	chr9:103066200-103113200	Weak transcription	Spleen	Spleen
9	chr9:103066200-103113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:103067600-103112400	Weak transcription	Small Intestine	intestine
11	chr9:103072200-103113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:103074000-103113200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:103078400-103111200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:103078400-103112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:103078600-103109000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:103079000-103103600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:103079800-103107600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:103080000-103108400	Weak transcription	HSMMtube	muscle
19	chr9:103081000-103104200	Weak transcription	Fetal Heart	heart
20	chr9:103081200-103104600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr9:103081200-103107600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:103082800-103111800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr9:103083800-103113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr9:103085800-103104400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:103086600-103107800	Weak transcription	NHLF	lung
26	chr9:103088400-103112000	Weak transcription	Brain Germinal Matrix	brain
27	chr9:103088600-103104200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr9:103088600-103107800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr9:103088600-103112400	Weak transcription	Brain Angular Gyrus	brain
30	chr9:103088600-103113000	Weak transcription	Fetal Brain Female	brain
31	chr9:103088600-103114400	Weak transcription	Lung	lung
32	chr9:103088800-103107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:103088800-103108800	Weak transcription	Brain Anterior Caudate	brain
34	chr9:103088800-103112400	Weak transcription	Psoas Muscle	Psoas
35	chr9:103088800-103113400	Weak transcription	Fetal Intestine Small	intestine
36	chr9:103088800-103114400	Weak transcription	Gastric	stomach
37	chr9:103089400-103112800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:103090200-103107400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:103090600-103111600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:103090800-103107600	Weak transcription	Osteobl	bone
41	chr9:103091000-103103800	Weak transcription	HSMM	muscle
42	chr9:103091000-103108200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr9:103091000-103110200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr9:103091200-103104000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:103091200-103113200	Weak transcription	Liver	Liver
46	chr9:103092400-103101800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr9:103092400-103103800	Weak transcription	GM12878-XiMat	blood
48	chr9:103092400-103107200	Weak transcription	HUVEC	blood vessel
49	chr9:103092400-103107400	Weak transcription	Fetal Lung	lung
50	chr9:103092400-103107600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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