Variant report

Variant	rs10118701
Chromosome Location	chr9:103061366-103061367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103059248..103062054-chr9:103070984..103072739,2	K562	blood:
2	chr9:103056132..103059844-chr9:103061176..103064038,4	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10117799	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118398	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10120244	0.88[ASN][1000 genomes]
rs10123866	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123913	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124133	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10124893	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10125785	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10760724	0.95[ASN][1000 genomes]
rs10819751	0.95[ASN][1000 genomes]
rs10819756	0.82[ASN][1000 genomes]
rs10819759	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10819761	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10819762	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10819764	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10819767	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989049	0.98[ASN][1000 genomes]
rs10989056	0.88[ASN][1000 genomes]
rs10989064	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989067	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989070	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11789196	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684939	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1338121	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs1338123	0.86[CHB][hapmap];0.95[ASN][1000 genomes]
rs1338124	0.86[CHB][hapmap];0.95[ASN][1000 genomes]
rs1338125	0.85[CHB][hapmap];0.95[ASN][1000 genomes]
rs1338126	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs1930243	0.85[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs1961367	0.88[ASN][1000 genomes]
rs2026999	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2065997	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs2151131	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2210498	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2245216	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs2417084	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2417176	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2485745	0.85[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2491098	0.83[ASN][1000 genomes]
rs2787368	0.85[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs2787369	0.86[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs2787370	0.88[ASN][1000 genomes]
rs2787371	0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs2787372	0.97[ASN][1000 genomes]
rs2787373	0.97[ASN][1000 genomes]
rs2787374	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2787375	0.85[CHB][hapmap];0.97[ASN][1000 genomes]
rs2787376	0.90[ASN][1000 genomes]
rs2787377	0.98[ASN][1000 genomes]
rs2787379	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2787380	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs2787381	0.93[ASN][1000 genomes]
rs2787382	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2787383	0.95[ASN][1000 genomes]
rs2787384	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2787385	0.93[ASN][1000 genomes]
rs2787386	0.83[ASN][1000 genomes]
rs2787388	0.95[ASN][1000 genomes]
rs2787390	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs2806689	0.86[ASN][1000 genomes]
rs2806690	0.84[ASN][1000 genomes]
rs2806691	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs2806692	0.95[ASN][1000 genomes]
rs2806693	0.85[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2806694	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2806695	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs2806696	0.86[CHB][hapmap];0.95[ASN][1000 genomes]
rs2806699	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2806700	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs2806701	0.83[ASN][1000 genomes]
rs2806702	0.85[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs2806703	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28464821	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3813712	0.85[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs3923501	0.98[ASN][1000 genomes]
rs4128230	0.95[ASN][1000 genomes]
rs4237194	0.85[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4237195	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237196	0.88[ASN][1000 genomes]
rs4446782	0.98[ASN][1000 genomes]
rs4742782	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742783	0.92[ASN][1000 genomes]
rs4742784	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743392	0.98[ASN][1000 genomes]
rs4743393	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743394	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743395	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4743396	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5029342	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5029343	0.98[ASN][1000 genomes]
rs59242794	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6479008	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479009	0.98[ASN][1000 genomes]
rs6479011	0.87[ASN][1000 genomes]
rs6479013	0.85[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6479014	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7020988	0.98[ASN][1000 genomes]
rs7021310	0.88[ASN][1000 genomes]
rs7025891	0.87[ASN][1000 genomes]
rs7025938	0.91[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035619	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036570	0.88[ASN][1000 genomes]
rs7047694	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7048601	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs7472	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7849966	0.98[ASN][1000 genomes]
rs7852189	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7854693	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7860513	0.88[ASN][1000 genomes]
rs7864494	0.85[CHB][hapmap];0.97[ASN][1000 genomes]
rs7866850	0.88[ASN][1000 genomes]
rs7869985	0.88[ASN][1000 genomes]
rs7871702	0.88[ASN][1000 genomes]
rs7874710	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7874900	0.85[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7875775	0.88[ASN][1000 genomes]
rs914711	0.85[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs9299338	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9408998	0.84[ASN][1000 genomes]
rs944710	0.85[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs946054	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs959893	0.92[ASN][1000 genomes]
rs9775014	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9775182	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10118701	TEX10	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103044000-103067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:103044200-103071200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
4	chr9:103044800-103067800	Strong transcription	Stomach Smooth Muscle	stomach
5	chr9:103046000-103075400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr9:103046200-103072800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:103046600-103092400	Strong transcription	Fetal Thymus	thymus
9	chr9:103047000-103061400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr9:103047200-103063000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:103047400-103070800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:103048000-103068600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:103048000-103078000	Strong transcription	Primary T cells from cord blood	blood
14	chr9:103048200-103062600	Weak transcription	Small Intestine	intestine
15	chr9:103048200-103064600	Strong transcription	Adipose Nuclei	Adipose
16	chr9:103048200-103069600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:103048400-103068200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:103048400-103083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr9:103048600-103067600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:103049000-103073800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:103049400-103066800	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr9:103049600-103065800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:103050000-103066400	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:103050400-103065000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr9:103050600-103064800	Weak transcription	Psoas Muscle	Psoas
26	chr9:103050600-103067400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:103050600-103067400	Strong transcription	A549	lung
28	chr9:103050600-103069600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr9:103050600-103086400	Strong transcription	Dnd41	blood
30	chr9:103050800-103080400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:103051000-103068200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr9:103051000-103068400	Strong transcription	Fetal Muscle Leg	muscle
33	chr9:103051000-103088800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:103051200-103066600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:103051200-103067800	Strong transcription	Fetal Stomach	stomach
36	chr9:103051200-103078000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:103051400-103068000	Strong transcription	Duodenum Mucosa	Duodenum
38	chr9:103051400-103074000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:103051800-103066200	Strong transcription	Primary B cells from cord blood	blood
40	chr9:103052000-103067800	Strong transcription	Fetal Lung	lung
41	chr9:103052000-103068000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:103052400-103063600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr9:103052600-103067400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:103052800-103063800	Strong transcription	Esophagus	oesophagus
45	chr9:103052800-103066400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:103053000-103066400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr9:103053000-103066800	Strong transcription	NHLF	lung
48	chr9:103053000-103067800	Strong transcription	Thymus	Thymus
49	chr9:103053000-103068200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr9:103053000-103068400	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links