Variant report

Variant	rs7035619
Chromosome Location	chr9:103071384-103071385
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr9:103071350-103071607	MCF10A-Er-Src	breast:	n/a	n/a
2	TCF12	chr9:103071071-103071826	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr9:103069870-103074163	K562	blood:	n/a	n/a
4	PBX3	chr9:103071150-103071776	SK-N-SH	brain:	n/a	n/a
5	GATA3	chr9:103071075-103072040	SK-N-SH	brain:	n/a	chr9:103072033-103072040 chr9:103072031-103072040 chr9:103072033-103072040 chr9:103072033-103072040 chr9:103071834-103071844
6	MAFK	chr9:103071266-103071759	IMR90	lung:	n/a	n/a
7	FOSL2	chr9:103071122-103071752	SK-N-SH	brain:	n/a	n/a
8	STAT3	chr9:103071372-103071576	MCF10A-Er-Src	breast:	n/a	n/a
9	GATA3	chr9:103071130-103071909	SK-N-SH	brain:	n/a	chr9:103071834-103071844
10	CEBPB	chr9:103071247-103071793	IMR90	lung:	n/a	n/a
11	POLR2A	chr9:103071154-103071701	SK-N-SH	brain:	n/a	n/a
12	MEF2A	chr9:103071117-103071785	SK-N-SH	brain:	n/a	chr9:103071264-103071273 chr9:103071252-103071267 chr9:103071388-103071404 chr9:103071252-103071267 chr9:103071405-103071419 chr9:103071388-103071403
13	EP300	chr9:103071018-103071805	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103059248..103062054-chr9:103070984..103072739,2	K562	blood:

Variant related genes	Relation type
TEX10	TF binding region

Extended variants
information (count: 151 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs10117799	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118398	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10118701	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120244	0.88[ASN][1000 genomes]
rs10123866	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123913	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124133	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10124893	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10125785	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10739796	0.85[JPT][hapmap]
rs10760724	0.95[ASN][1000 genomes]
rs10819751	0.95[ASN][1000 genomes]
rs10819756	0.82[ASN][1000 genomes]
rs10819759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10819761	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10819762	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10819764	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10819767	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989049	0.98[ASN][1000 genomes]
rs10989056	0.88[ASN][1000 genomes]
rs10989064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989070	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11789196	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336751	0.85[JPT][hapmap]
rs12684939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1338121	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs1338123	0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs1338124	0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs1338125	0.85[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs1338126	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs1415926	0.85[JPT][hapmap]
rs1535667	0.85[JPT][hapmap]
rs1930243	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1961367	0.88[ASN][1000 genomes]
rs2026999	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2057476	0.85[JPT][hapmap]
rs2065997	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs2151131	0.85[CHB][hapmap]
rs2210498	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2245216	0.86[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs2417084	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2417176	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2476441	0.85[JPT][hapmap]
rs2485745	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2491098	0.83[ASN][1000 genomes]
rs2761056	0.85[JPT][hapmap]
rs2787363	0.85[JPT][hapmap]
rs2787364	0.85[JPT][hapmap]
rs2787365	0.85[JPT][hapmap]
rs2787368	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2787369	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2787370	0.88[ASN][1000 genomes]
rs2787371	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2787372	0.97[ASN][1000 genomes]
rs2787373	0.97[ASN][1000 genomes]
rs2787374	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2787375	0.85[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs2787376	0.90[ASN][1000 genomes]
rs2787377	0.98[ASN][1000 genomes]
rs2787379	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2787380	0.86[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs2787381	0.93[ASN][1000 genomes]
rs2787382	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2787383	0.95[ASN][1000 genomes]
rs2787384	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2787385	0.93[ASN][1000 genomes]
rs2787386	0.83[ASN][1000 genomes]
rs2787388	0.95[ASN][1000 genomes]
rs2787390	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs2787395	0.85[JPT][hapmap]
rs2787396	0.85[JPT][hapmap]
rs2787397	0.85[JPT][hapmap]
rs2806687	0.85[JPT][hapmap]
rs2806689	0.86[ASN][1000 genomes]
rs2806690	0.84[ASN][1000 genomes]
rs2806691	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs2806692	0.95[ASN][1000 genomes]
rs2806693	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2806694	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2806695	0.86[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs2806696	0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs2806699	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2806700	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs2806701	0.83[ASN][1000 genomes]
rs2806702	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2806703	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28464821	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3813712	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3923501	0.98[ASN][1000 genomes]
rs4128230	0.95[ASN][1000 genomes]
rs4237194	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4237195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237196	0.88[ASN][1000 genomes]
rs4446782	0.98[ASN][1000 genomes]
rs4742782	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742783	0.92[ASN][1000 genomes]
rs4742784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743392	0.98[ASN][1000 genomes]
rs4743393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743394	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4743396	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5029342	0.87[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5029343	0.98[ASN][1000 genomes]
rs59242794	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6479008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479009	0.98[ASN][1000 genomes]
rs6479011	0.87[ASN][1000 genomes]
rs6479013	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs6479014	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7020988	0.98[ASN][1000 genomes]
rs7021310	0.88[ASN][1000 genomes]
rs7025891	0.87[ASN][1000 genomes]
rs7025938	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036570	0.88[ASN][1000 genomes]
rs7047694	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7048601	0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7472	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846794	0.85[JPT][hapmap]
rs7847213	0.85[JPT][hapmap]
rs7849966	0.98[ASN][1000 genomes]
rs7852189	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7854693	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7860513	0.88[ASN][1000 genomes]
rs7861003	0.85[JPT][hapmap]
rs7864494	0.85[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs7866850	0.88[ASN][1000 genomes]
rs7869985	0.88[ASN][1000 genomes]
rs7871702	0.88[ASN][1000 genomes]
rs7874710	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7874900	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7875775	0.88[ASN][1000 genomes]
rs846752	0.85[JPT][hapmap]
rs846756	0.85[JPT][hapmap]
rs846759	0.85[JPT][hapmap]
rs846761	0.85[JPT][hapmap]
rs846766	0.85[JPT][hapmap]
rs846770	0.85[JPT][hapmap]
rs860171	0.85[JPT][hapmap]
rs914711	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9299338	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9408998	0.84[ASN][1000 genomes]
rs944710	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs946054	0.86[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs959893	0.92[ASN][1000 genomes]
rs9775014	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9775182	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7035619	TEX10	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
2	chr9:103046000-103075400	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr9:103046200-103072800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:103046600-103092400	Strong transcription	Fetal Thymus	thymus
6	chr9:103048000-103078000	Strong transcription	Primary T cells from cord blood	blood
7	chr9:103048400-103083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:103049000-103073800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:103050600-103086400	Strong transcription	Dnd41	blood
10	chr9:103050800-103080400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:103051000-103088800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:103051200-103078000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:103051400-103074000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:103053400-103074800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:103055800-103077600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:103057600-103112600	Weak transcription	Fetal Brain Male	brain
17	chr9:103058400-103092200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:103058800-103084800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:103059800-103074400	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:103061200-103074200	Weak transcription	Brain Germinal Matrix	brain
21	chr9:103061800-103073400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:103062200-103074200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:103063800-103093400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr9:103063800-103106000	Weak transcription	Esophagus	oesophagus
25	chr9:103064000-103100000	Weak transcription	Colonic Mucosa	Colon
26	chr9:103064200-103093200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:103064600-103079400	Weak transcription	HSMMtube	muscle
28	chr9:103064800-103104200	Weak transcription	Right Ventricle	heart
29	chr9:103065000-103071400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:103065000-103080600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr9:103065000-103114200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:103065200-103087600	Weak transcription	Brain Anterior Caudate	brain
33	chr9:103065400-103080200	Weak transcription	Brain Substantia Nigra	brain
34	chr9:103065400-103087400	Weak transcription	Psoas Muscle	Psoas
35	chr9:103066000-103071600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:103066200-103071400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr9:103066200-103072200	Weak transcription	Left Ventricle	heart
38	chr9:103066200-103073400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr9:103066200-103073600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:103066200-103080200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr9:103066200-103087800	Weak transcription	Gastric	stomach
42	chr9:103066200-103088400	Weak transcription	Lung	lung
43	chr9:103066200-103100400	Weak transcription	Aorta	Aorta
44	chr9:103066200-103112600	Weak transcription	Pancreas	Pancrea
45	chr9:103066200-103113200	Weak transcription	Spleen	Spleen
46	chr9:103066200-103113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:103066400-103071800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:103066400-103072000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:103066400-103079400	Weak transcription	HUVEC	blood vessel
50	chr9:103066600-103080400	Weak transcription	Colon Smooth Muscle	Colon

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