Variant report

Variant	rs2806693
Chromosome Location	chr9:103027855-103027856
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 193 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:186)

rs_ID	r²[population]
rs10116798	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10117150	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10117799	0.92[ASN][1000 genomes]
rs10118398	0.82[ASN][1000 genomes]
rs10118701	0.85[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs10120244	0.80[ASN][1000 genomes]
rs10123866	0.92[ASN][1000 genomes]
rs10123913	0.92[ASN][1000 genomes]
rs10124133	0.82[ASN][1000 genomes]
rs10124893	0.90[ASN][1000 genomes]
rs10125785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1014652	0.85[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10739796	0.96[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10760720	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10760724	0.90[ASN][1000 genomes]
rs10819737	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10819751	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10819759	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10819761	0.85[ASN][1000 genomes]
rs10819762	0.82[ASN][1000 genomes]
rs10819764	0.82[ASN][1000 genomes]
rs10819767	0.82[ASN][1000 genomes]
rs10988973	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs10989009	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10989049	0.93[ASN][1000 genomes]
rs10989056	0.84[ASN][1000 genomes]
rs10989064	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10989067	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10989070	0.82[ASN][1000 genomes]
rs1099909	0.81[AMR][1000 genomes]
rs11789196	0.92[ASN][1000 genomes]
rs12336751	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12552646	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs12684939	0.82[ASN][1000 genomes]
rs13301295	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1338119	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1338121	1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs1338123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338124	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338125	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338126	0.84[ASN][1000 genomes]
rs1342147	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs1415926	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1529191	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs1529192	0.92[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap]
rs1534726	0.92[CEU][hapmap]
rs1535667	0.85[JPT][hapmap]
rs1572607	0.84[CHD][hapmap]
rs1930243	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1961367	0.83[ASN][1000 genomes]
rs1999877	0.83[CHD][hapmap]
rs2026999	0.82[ASN][1000 genomes]
rs2057476	0.85[JPT][hapmap]
rs2065997	1.00[CHD][hapmap];0.80[ASN][1000 genomes]
rs2151131	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2181579	0.84[CHD][hapmap]
rs2210498	0.82[ASN][1000 genomes]
rs2245216	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2417084	0.82[ASN][1000 genomes]
rs2417176	0.82[ASN][1000 genomes]
rs2476441	0.96[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2476442	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2485745	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2491095	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2491098	0.88[ASN][1000 genomes]
rs2761056	0.96[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2787361	0.96[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2787363	0.96[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2787364	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs2787365	1.00[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2787366	0.96[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787368	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2787369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2787370	0.83[ASN][1000 genomes]
rs2787371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2787372	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2787373	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2787374	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs2787375	0.92[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2787376	0.85[ASN][1000 genomes]
rs2787377	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2787379	0.82[ASN][1000 genomes]
rs2787380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2787381	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2787382	0.84[ASN][1000 genomes]
rs2787383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2787384	0.84[ASN][1000 genomes]
rs2787385	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2787386	0.88[ASN][1000 genomes]
rs2787388	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2787390	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs2787391	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2787394	0.82[CEU][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2787395	1.00[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2787396	0.85[JPT][hapmap]
rs2787397	0.89[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806681	0.83[CHD][hapmap]
rs2806682	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2806683	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806684	0.83[CEU][hapmap]
rs2806687	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs2806689	0.84[ASN][1000 genomes]
rs2806690	0.86[ASN][1000 genomes]
rs2806691	1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs2806692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2806694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806695	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2806699	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs2806700	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2806702	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2806703	0.85[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs28464821	0.85[ASN][1000 genomes]
rs3813712	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3923501	0.93[ASN][1000 genomes]
rs4128230	0.90[ASN][1000 genomes]
rs4237194	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs4237195	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4237196	0.83[ASN][1000 genomes]
rs4446782	0.93[ASN][1000 genomes]
rs4517187	0.84[CHD][hapmap]
rs4742782	0.92[ASN][1000 genomes]
rs4742783	0.87[ASN][1000 genomes]
rs4742784	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4743392	0.93[ASN][1000 genomes]
rs4743393	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4743394	0.85[ASN][1000 genomes]
rs4743395	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4743396	0.82[ASN][1000 genomes]
rs5029342	0.92[ASN][1000 genomes]
rs5029343	0.93[ASN][1000 genomes]
rs59242794	0.85[ASN][1000 genomes]
rs6479001	0.92[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap]
rs6479002	0.92[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap]
rs6479008	0.88[ASN][1000 genomes]
rs6479009	0.93[ASN][1000 genomes]
rs6479011	0.83[ASN][1000 genomes]
rs6479013	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs6479014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7020988	0.93[ASN][1000 genomes]
rs7021310	0.83[ASN][1000 genomes]
rs7025891	0.82[ASN][1000 genomes]
rs7025938	0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7035619	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7036570	0.83[ASN][1000 genomes]
rs7048601	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs7472	0.92[ASN][1000 genomes]
rs7846794	0.92[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap]
rs7847213	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs7849966	0.93[ASN][1000 genomes]
rs7852189	0.82[ASN][1000 genomes]
rs7854693	0.92[ASN][1000 genomes]
rs7859492	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7860513	0.83[ASN][1000 genomes]
rs7861003	0.81[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.87[TSI][hapmap]
rs7864494	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7866850	0.83[ASN][1000 genomes]
rs7869985	0.83[ASN][1000 genomes]
rs7871702	0.83[ASN][1000 genomes]
rs7874900	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7875775	0.83[ASN][1000 genomes]
rs846751	0.84[AMR][1000 genomes]
rs846752	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs846753	0.96[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs846756	0.92[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap]
rs846759	0.85[JPT][hapmap]
rs846761	0.96[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs846765	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs846766	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs846768	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs846769	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs846770	0.96[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs860171	0.96[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs914711	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9299337	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9299338	0.82[ASN][1000 genomes]
rs9408995	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9408998	0.86[ASN][1000 genomes]
rs9409325	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs944710	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs946054	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs959893	0.87[ASN][1000 genomes]
rs9695692	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9775014	0.87[ASN][1000 genomes]
rs9775182	0.93[ASN][1000 genomes]
rs9886877	0.85[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	esv3353349	chr9:103014446-103038360	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2806693	STX17	cis	Esophagus Mucosa	GTEx
rs2806693	INVS	cis	multi-tissue	Pritchard

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102972400-103035200	Weak transcription	Esophagus	oesophagus
2	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
3	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
5	chr9:102975800-103045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:102976800-103047800	Weak transcription	Fetal Heart	heart
7	chr9:102979400-103054600	Weak transcription	NHEK	skin
8	chr9:102987400-103045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:102987400-103054600	Weak transcription	Gastric	stomach
10	chr9:102989400-103047200	Weak transcription	GM12878-XiMat	blood
11	chr9:102992600-103039000	Weak transcription	NHDF-Ad	bronchial
12	chr9:102994800-103046600	Weak transcription	Pancreas	Pancrea
13	chr9:102997800-103054400	Weak transcription	Colonic Mucosa	Colon
14	chr9:102999800-103028000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:102999800-103035200	Weak transcription	Right Ventricle	heart
16	chr9:103000000-103034800	Weak transcription	Aorta	Aorta
17	chr9:103003400-103046800	Weak transcription	HMEC	breast
18	chr9:103006000-103039200	Weak transcription	HSMM	muscle
19	chr9:103008800-103039600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:103009400-103047600	Weak transcription	HUVEC	blood vessel
21	chr9:103010800-103035400	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:103013000-103047400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr9:103015000-103034800	Weak transcription	Thymus	Thymus
24	chr9:103015000-103046800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:103015400-103039200	Weak transcription	Osteobl	bone
26	chr9:103015400-103039800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:103015400-103046400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:103015400-103046600	Weak transcription	Brain Substantia Nigra	brain
29	chr9:103015400-103046800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:103015600-103037600	Weak transcription	Brain Anterior Caudate	brain
31	chr9:103015600-103039400	Weak transcription	NH-A	brain
32	chr9:103015600-103046600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr9:103016000-103028200	Weak transcription	Ovary	ovary
34	chr9:103016000-103044400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr9:103016000-103047200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr9:103021200-103041200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:103021800-103028200	Weak transcription	Brain Germinal Matrix	brain
38	chr9:103021800-103035000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr9:103021800-103035200	Weak transcription	Fetal Brain Female	brain
40	chr9:103021800-103044400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:103021800-103044400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr9:103022000-103035200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:103022000-103047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:103022200-103029600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr9:103023800-103046200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:103025000-103030600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:103025200-103030000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr9:103025800-103030000	Strong transcription	Dnd41	blood
49	chr9:103026200-103030000	Strong transcription	Primary T cells from cord blood	blood
50	chr9:103026200-103047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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