Variant report

Variant	rs2787366
Chromosome Location	chr9:102894718-102894719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102885883..102887499-chr9:102893805..102895445,2	K562	blood:

Extended variants
information (count: 210 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:205)

rs_ID	r²[population]
rs10116798	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10117150	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1014651	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1014652	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10156395	0.85[ASN][1000 genomes]
rs10739795	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs10739796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10760710	0.93[ASN][1000 genomes]
rs10760711	0.93[ASN][1000 genomes]
rs10760712	0.93[ASN][1000 genomes]
rs10760720	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10819714	0.93[ASN][1000 genomes]
rs10819715	0.93[ASN][1000 genomes]
rs10819716	0.93[ASN][1000 genomes]
rs10819717	0.93[ASN][1000 genomes]
rs10819719	0.91[ASN][1000 genomes]
rs10819737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10819739	0.93[ASN][1000 genomes]
rs10819751	0.82[AMR][1000 genomes]
rs10819759	0.84[CHD][hapmap]
rs10988945	0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs10988963	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10988968	0.91[ASN][1000 genomes]
rs10988969	0.91[ASN][1000 genomes]
rs10988973	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs10988974	0.89[ASN][1000 genomes]
rs10989009	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1099909	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1099910	0.86[ASN][1000 genomes]
rs12336751	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12552646	1.00[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12685650	0.93[ASN][1000 genomes]
rs13301295	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1338119	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1338121	0.83[CHD][hapmap]
rs1338123	0.96[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1338124	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1338125	0.85[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes]
rs1342147	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs1361668	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1406613	0.93[ASN][1000 genomes]
rs1415926	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418267	0.93[ASN][1000 genomes]
rs1529191	1.00[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs1529192	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1529193	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1534726	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1535667	0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs1539297	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1572607	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[ASN][1000 genomes]
rs1578644	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs1578645	0.93[ASN][1000 genomes]
rs1578646	0.93[ASN][1000 genomes]
rs1852864	0.93[ASN][1000 genomes]
rs1852865	0.93[ASN][1000 genomes]
rs1891334	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1999877	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]
rs2057476	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs2065997	0.84[CHD][hapmap]
rs2093696	0.93[ASN][1000 genomes]
rs2096158	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2104273	0.93[ASN][1000 genomes]
rs2181579	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2209082	0.86[ASN][1000 genomes]
rs2245216	0.85[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2476439	0.93[ASN][1000 genomes]
rs2476441	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2476442	0.83[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2485745	0.96[CEU][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2485746	0.86[AMR][1000 genomes]
rs2491095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2491096	0.86[ASN][1000 genomes]
rs2698999	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2761053	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2761056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2787361	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2787363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2787364	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs2787365	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2787368	0.85[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes]
rs2787369	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2787371	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2787372	0.96[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2787374	0.84[CHD][hapmap]
rs2787375	0.89[CEU][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs2787380	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2787381	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2787383	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787385	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787388	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787390	0.83[CHD][hapmap]
rs2787391	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2787393	0.83[ASN][1000 genomes]
rs2787394	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2787395	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2787396	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2787397	0.91[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2791335	0.88[ASN][1000 genomes]
rs2791336	0.93[ASN][1000 genomes]
rs2791337	0.93[ASN][1000 genomes]
rs2795575	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs2806681	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs2806682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2806683	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2806684	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2806685	0.84[ASN][1000 genomes]
rs2806687	1.00[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[ASN][1000 genomes]
rs2806688	0.85[ASN][1000 genomes]
rs2806691	0.84[CHD][hapmap]
rs2806692	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806693	0.96[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806694	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806695	0.85[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs2806696	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806699	0.84[CHD][hapmap]
rs2806700	0.83[MEX][hapmap]
rs2806702	0.89[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes]
rs2806703	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs28448789	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35493819	0.81[ASN][1000 genomes]
rs3813712	0.83[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap]
rs3824510	0.85[ASN][1000 genomes]
rs41346545	0.93[ASN][1000 genomes]
rs4237194	0.84[CHD][hapmap]
rs4237195	0.84[CHD][hapmap]
rs4495492	0.89[ASN][1000 genomes]
rs4503155	0.93[ASN][1000 genomes]
rs4517187	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4742779	0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs4743375	0.93[ASN][1000 genomes]
rs4743376	0.93[ASN][1000 genomes]
rs4743378	0.85[ASN][1000 genomes]
rs4743379	0.89[ASN][1000 genomes]
rs4743380	0.89[ASN][1000 genomes]
rs4743381	0.86[ASN][1000 genomes]
rs4743382	0.93[ASN][1000 genomes]
rs4743384	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4743386	0.89[ASN][1000 genomes]
rs6478991	0.93[ASN][1000 genomes]
rs6478994	0.93[ASN][1000 genomes]
rs6478995	0.93[ASN][1000 genomes]
rs6478996	0.93[ASN][1000 genomes]
rs6478997	0.93[ASN][1000 genomes]
rs6478998	0.93[ASN][1000 genomes]
rs6479000	0.93[ASN][1000 genomes]
rs6479001	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6479002	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6479013	0.84[CHD][hapmap]
rs7018981	0.91[ASN][1000 genomes]
rs7022493	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7024016	0.93[ASN][1000 genomes]
rs7025300	0.93[ASN][1000 genomes]
rs7026532	0.93[ASN][1000 genomes]
rs7027414	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs7029020	0.93[ASN][1000 genomes]
rs7029048	0.93[ASN][1000 genomes]
rs7032333	0.93[ASN][1000 genomes]
rs7033091	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs7036518	0.89[ASN][1000 genomes]
rs7037362	0.93[ASN][1000 genomes]
rs7041338	0.93[ASN][1000 genomes]
rs7042194	0.93[ASN][1000 genomes]
rs7042912	0.93[ASN][1000 genomes]
rs7043057	0.93[ASN][1000 genomes]
rs7044219	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7045612	0.85[ASN][1000 genomes]
rs7047092	0.91[ASN][1000 genomes]
rs7846794	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7847213	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7853485	0.91[ASN][1000 genomes]
rs7856844	0.93[ASN][1000 genomes]
rs7857530	0.93[ASN][1000 genomes]
rs7858606	0.93[ASN][1000 genomes]
rs7859492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7861003	0.91[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7862460	0.93[ASN][1000 genomes]
rs7864494	0.89[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs7870585	0.91[ASN][1000 genomes]
rs7873746	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[LWK][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap]
rs7874449	0.89[ASN][1000 genomes]
rs846751	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs846752	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846753	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs846754	0.89[ASN][1000 genomes]
rs846755	0.91[ASN][1000 genomes]
rs846756	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs846758	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs846759	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs846761	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs846762	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs846763	0.86[ASN][1000 genomes]
rs846765	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs846766	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs846768	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846770	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs860171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs863668	0.93[ASN][1000 genomes]
rs9299337	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9408995	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9409325	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs942163	0.93[ASN][1000 genomes]
rs946054	0.92[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs9695692	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886877	0.91[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2787366	STX17	cis	Esophagus Mucosa	GTEx
rs2787366	MURC	cis	parietal	SCAN
rs2787366	INVS	cis	multi-tissue	Pritchard

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102862200-102902400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102867000-102899800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:102868600-102895600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:102869200-102901800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:102869400-102899000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:102869800-102895600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:102869800-102896400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:102870000-102895800	Weak transcription	Thymus	Thymus
9	chr9:102870000-102902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:102871200-102897400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:102872000-102896600	Weak transcription	Placenta	Placenta
12	chr9:102872800-102895000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:102873800-102895800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:102873800-102900200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:102874000-102896000	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:102874000-102896000	Weak transcription	Lung	lung
17	chr9:102874200-102895600	Weak transcription	Brain Anterior Caudate	brain
18	chr9:102874200-102895800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr9:102874200-102896000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:102874200-102896200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:102874200-102896400	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:102874200-102897600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:102874200-102898800	Weak transcription	Fetal Brain Male	brain
24	chr9:102874200-102902600	Weak transcription	HMEC	breast
25	chr9:102874200-102902600	Weak transcription	NHEK	skin
26	chr9:102874200-102912600	Weak transcription	Osteobl	bone
27	chr9:102874200-102937600	Weak transcription	Aorta	Aorta
28	chr9:102874400-102896400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr9:102874600-102897800	Weak transcription	Brain Germinal Matrix	brain
30	chr9:102879800-102935000	Weak transcription	Ovary	ovary
31	chr9:102880000-102897600	Weak transcription	Adipose Nuclei	Adipose
32	chr9:102881400-102902200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:102882000-102899000	Weak transcription	Psoas Muscle	Psoas
34	chr9:102883000-102937600	Weak transcription	Fetal Intestine Large	intestine
35	chr9:102883200-102895600	Weak transcription	A549	lung
36	chr9:102883800-102896000	Weak transcription	Left Ventricle	heart
37	chr9:102883800-102928400	Weak transcription	Primary T cells from cord blood	blood
38	chr9:102884000-102895800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr9:102884400-102901800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr9:102884800-102898400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:102885200-102932600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:102885600-102895400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:102885600-102897600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:102885600-102900400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:102886000-102898400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:102886000-102899600	Weak transcription	GM12878-XiMat	blood
47	chr9:102886000-102931600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:102887000-102901800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr9:102887800-102903400	Weak transcription	Pancreas	Pancrea
50	chr9:102887800-102922200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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