Variant report

Variant	rs7027414
Chromosome Location	chr9:102790546-102790547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:102784351..102787114-chr9:102789576..102792051,2	K562	blood:
2	chr9:102790163..102791038-chr9:102978082..102979151,4	MCF-7	breast:
3	chr9:102789349..102791148-chr9:102853762..102855551,2	K562	blood:
4	chr9:102790104..102791073-chr9:102977999..102979056,8	MCF-7	breast:
5	chr9:102790214..102791085-chr9:102984669..102985566,5	MCF-7	breast:
6	chr9:102580747..102583257-chr9:102787829..102791393,3	K562	blood:
7	chr9:102790085..102791080-chr9:102977840..102979106,8	K562	blood:
8	chr9:102580856..102583257-chr9:102789611..102791393,2	K562	blood:
9	chr9:102784118..102786318-chr9:102788930..102790802,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 175 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs10116798	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10117150	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1014651	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1014652	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10156395	0.89[ASN][1000 genomes]
rs10739795	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739796	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs10760710	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760711	0.96[ASN][1000 genomes]
rs10760712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760720	0.89[ASN][1000 genomes]
rs10819714	0.96[ASN][1000 genomes]
rs10819715	0.96[ASN][1000 genomes]
rs10819716	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819717	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819719	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10819737	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs10819739	0.89[ASN][1000 genomes]
rs10988945	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10988963	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988968	0.94[ASN][1000 genomes]
rs10988969	0.94[ASN][1000 genomes]
rs10988973	0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs10988974	0.93[ASN][1000 genomes]
rs10989009	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1099910	0.83[ASN][1000 genomes]
rs11555502	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12336751	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12552646	0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[ASN][1000 genomes]
rs12685650	0.96[ASN][1000 genomes]
rs13301295	0.89[ASN][1000 genomes]
rs1338119	0.85[ASN][1000 genomes]
rs1342147	0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs1361668	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1406613	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415926	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1418267	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529191	0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.96[ASN][1000 genomes]
rs1529192	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529193	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1535667	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1539297	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1572607	0.91[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1578644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578646	0.96[ASN][1000 genomes]
rs1852864	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852865	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891334	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1999877	0.91[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2057476	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2093696	0.96[ASN][1000 genomes]
rs2096158	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104273	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181579	0.91[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs2209082	0.90[ASN][1000 genomes]
rs2416985	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2476439	0.89[ASN][1000 genomes]
rs2476441	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs2476442	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2485746	0.81[AMR][1000 genomes]
rs2491095	0.85[ASN][1000 genomes]
rs2491096	0.82[ASN][1000 genomes]
rs2698999	0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs2761053	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2761056	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787361	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787363	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[ASN][1000 genomes]
rs2787364	0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2787365	0.85[ASN][1000 genomes]
rs2787366	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787393	0.80[ASN][1000 genomes]
rs2787395	0.80[ASN][1000 genomes]
rs2787396	0.80[ASN][1000 genomes]
rs2787397	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2791335	0.91[ASN][1000 genomes]
rs2791336	0.96[ASN][1000 genomes]
rs2791337	0.96[ASN][1000 genomes]
rs2795575	0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs2806681	0.91[CHD][hapmap];0.84[ASN][1000 genomes]
rs2806682	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs2806683	0.83[ASN][1000 genomes]
rs2806684	0.84[ASN][1000 genomes]
rs2806685	0.80[ASN][1000 genomes]
rs2806687	0.80[ASN][1000 genomes]
rs2806688	0.82[ASN][1000 genomes]
rs28448789	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493819	0.84[ASN][1000 genomes]
rs3824510	0.89[ASN][1000 genomes]
rs41346545	0.96[ASN][1000 genomes]
rs4428721	0.81[ASW][hapmap]
rs4495492	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4503155	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4517187	0.91[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.94[ASN][1000 genomes]
rs4742779	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4743375	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743376	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743378	0.89[ASN][1000 genomes]
rs4743379	0.93[ASN][1000 genomes]
rs4743380	0.93[ASN][1000 genomes]
rs4743381	0.89[ASN][1000 genomes]
rs4743382	0.96[ASN][1000 genomes]
rs4743384	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743386	0.93[ASN][1000 genomes]
rs6478991	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478992	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6478993	0.82[AMR][1000 genomes]
rs6478994	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478995	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478996	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478997	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478998	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479000	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479002	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7018981	0.94[ASN][1000 genomes]
rs7022493	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024016	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025300	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026532	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029020	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029048	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032333	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033091	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036518	0.93[ASN][1000 genomes]
rs7037362	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041338	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042194	0.96[ASN][1000 genomes]
rs7042912	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043057	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044219	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045612	0.89[ASN][1000 genomes]
rs7047092	0.95[ASN][1000 genomes]
rs7846794	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7847213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7853485	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856844	0.89[ASN][1000 genomes]
rs7857530	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858606	0.96[ASN][1000 genomes]
rs7859492	0.87[ASN][1000 genomes]
rs7861003	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7862460	0.96[ASN][1000 genomes]
rs7865257	0.81[ASW][hapmap]
rs7870585	0.95[ASN][1000 genomes]
rs7873746	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs7874449	0.93[ASN][1000 genomes]
rs846752	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs846753	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs846754	0.93[ASN][1000 genomes]
rs846755	0.94[ASN][1000 genomes]
rs846756	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs846758	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs846759	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs846761	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs846762	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs846763	0.83[ASN][1000 genomes]
rs846765	0.81[AMR][1000 genomes]
rs846766	0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs846768	0.89[ASN][1000 genomes]
rs846769	0.89[ASN][1000 genomes]
rs846770	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs860171	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs863668	0.89[ASN][1000 genomes]
rs9299337	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9408995	0.84[ASN][1000 genomes]
rs9409325	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs942163	0.96[ASN][1000 genomes]
rs9695692	0.89[ASN][1000 genomes]
rs9886877	1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7027414	STX17	cis	Stomach	GTEx
rs7027414	STX17	cis	Esophagus Mucosa	GTEx
rs7027414	INVS	cis	cerebellum	SCAN
rs7027414	TBC1D22B	cis	Cerebellum	GTEx
rs7027414	MURC	cis	parietal	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102729600-102826800	Weak transcription	HMEC	breast
2	chr9:102757400-102790600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:102766400-102794800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:102766800-102793000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:102767000-102799400	Weak transcription	Spleen	Spleen
6	chr9:102767000-102820400	Weak transcription	Colonic Mucosa	Colon
7	chr9:102767200-102821800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:102767600-102796000	Weak transcription	Gastric	stomach
9	chr9:102767600-102799400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:102767600-102800400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:102767600-102826400	Weak transcription	Small Intestine	intestine
12	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
14	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:102771400-102816200	Weak transcription	NH-A	brain
16	chr9:102774000-102807400	Weak transcription	Fetal Kidney	kidney
17	chr9:102778400-102792600	Weak transcription	Thymus	Thymus
18	chr9:102778400-102799600	Weak transcription	Fetal Stomach	stomach
19	chr9:102778400-102799800	Weak transcription	Esophagus	oesophagus
20	chr9:102778400-102813200	Weak transcription	HUVEC	blood vessel
21	chr9:102778600-102796600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:102778800-102801800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:102779200-102790600	Weak transcription	K562	blood
24	chr9:102779800-102790600	Weak transcription	Fetal Heart	heart
25	chr9:102780400-102792600	Weak transcription	Left Ventricle	heart
26	chr9:102780400-102793200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:102780600-102790600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr9:102780800-102796200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:102781000-102795000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:102781800-102799600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr9:102781800-102811000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:102782000-102796600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr9:102782000-102799400	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:102782000-102813000	Weak transcription	HSMM	muscle
35	chr9:102782400-102796200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr9:102782600-102794800	Weak transcription	Fetal Lung	lung
37	chr9:102782600-102795000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr9:102782600-102812400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:102782600-102813200	Weak transcription	Placenta	Placenta
40	chr9:102783400-102790600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:102783600-102793000	Weak transcription	Lung	lung
42	chr9:102783600-102795000	Weak transcription	Aorta	Aorta
43	chr9:102783600-102796800	Weak transcription	HepG2	liver
44	chr9:102783600-102807400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:102783800-102792800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr9:102783800-102793000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:102783800-102793000	Weak transcription	Ovary	ovary
48	chr9:102783800-102794600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr9:102783800-102795000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr9:102783800-102795000	Weak transcription	Rectal Mucosa Donor 29	rectum

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