The 2.0 version of rSNPBase

Variant report

Variant rs1578645
Chromosome Location chr9:102798067-102798068
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:102729600-102826800 Weak transcription HMEC breast
2 chr9:102767000-102799400 Weak transcription Spleen Spleen
3 chr9:102767000-102820400 Weak transcription Colonic Mucosa Colon
4 chr9:102767200-102821800 Weak transcription Rectal Smooth Muscle rectum
5 chr9:102767600-102799400 Weak transcription Brain Inferior Temporal Lobe brain
6 chr9:102767600-102800400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr9:102767600-102826400 Weak transcription Small Intestine intestine
8 chr9:102767600-102845600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr9:102767800-102830000 Weak transcription HSMMtube muscle
10 chr9:102767800-102835600 Weak transcription Brain Hippocampus Middle brain
11 chr9:102771400-102816200 Weak transcription NH-A brain
12 chr9:102774000-102807400 Weak transcription Fetal Kidney kidney
13 chr9:102778400-102799600 Weak transcription Fetal Stomach stomach
14 chr9:102778400-102799800 Weak transcription Esophagus oesophagus
15 chr9:102778400-102813200 Weak transcription HUVEC blood vessel
16 chr9:102778800-102801800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr9:102781800-102799600 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr9:102781800-102811000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr9:102782000-102799400 Weak transcription Fetal Muscle Leg muscle
20 chr9:102782000-102813000 Weak transcription HSMM muscle
21 chr9:102782600-102812400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr9:102782600-102813200 Weak transcription Placenta Placenta
23 chr9:102783600-102807400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr9:102783800-102799400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr9:102783800-102799400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr9:102783800-102799600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr9:102783800-102799600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr9:102783800-102814000 Weak transcription Osteobl bone
29 chr9:102783800-102819200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr9:102784000-102813200 Weak transcription NHEK skin
31 chr9:102784400-102804600 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr9:102784600-102806600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr9:102785000-102803400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr9:102787400-102798200 Weak transcription Pancreatic Islets Pancreatic Islet
35 chr9:102787400-102799400 Weak transcription Fetal Intestine Large intestine
36 chr9:102787600-102799600 Weak transcription Psoas Muscle Psoas
37 chr9:102788600-102801200 Weak transcription Brain Angular Gyrus brain
38 chr9:102788600-102825600 Weak transcription A549 lung
39 chr9:102789000-102800400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr9:102790800-102808800 Weak transcription Brain Anterior Caudate brain
41 chr9:102790800-102809200 Weak transcription Brain Cingulate Gyrus brain
42 chr9:102791000-102799600 Weak transcription Adipose Nuclei Adipose
43 chr9:102791000-102810800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr9:102791000-102813000 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr9:102791200-102798400 Weak transcription Primary monocytes fromperipheralblood blood
46 chr9:102791800-102804600 Weak transcription Fetal Heart heart
47 chr9:102792800-102801600 Strong transcription Monocytes-CD14+_RO01746 blood
48 chr9:102792800-102812800 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr9:102793400-102799400 Weak transcription Lung lung
50 chr9:102793400-102813000 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015