Variant report

Variant	rs7024016
Chromosome Location	chr9:102829344-102829345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102827084..102829968-chr9:102832017..102833551,2	MCF-7	breast:

Extended variants
information (count: 182 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs10116798	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10117150	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1014651	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1014652	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10156395	0.89[ASN][1000 genomes]
rs10739795	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739796	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs10760710	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760711	0.96[ASN][1000 genomes]
rs10760712	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760720	0.89[ASN][1000 genomes]
rs10819714	0.96[ASN][1000 genomes]
rs10819715	0.96[ASN][1000 genomes]
rs10819716	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819717	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819719	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10819737	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs10819739	0.89[ASN][1000 genomes]
rs10988945	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10988963	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988968	0.94[ASN][1000 genomes]
rs10988969	0.94[ASN][1000 genomes]
rs10988973	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs10988974	0.93[ASN][1000 genomes]
rs10989009	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1099910	0.83[ASN][1000 genomes]
rs11555502	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12336751	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12552646	1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[ASN][1000 genomes]
rs12685650	0.96[ASN][1000 genomes]
rs13301295	0.89[ASN][1000 genomes]
rs1338119	0.85[ASN][1000 genomes]
rs1338121	0.83[CHD][hapmap]
rs1342147	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs1361668	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1406613	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415926	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1418267	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529191	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.96[ASN][1000 genomes]
rs1529192	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529193	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1535667	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1539297	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1572607	1.00[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1578644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578646	0.96[ASN][1000 genomes]
rs1852864	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852865	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891334	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1999877	1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2057476	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2093696	0.96[ASN][1000 genomes]
rs2096158	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104273	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181579	1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs2209082	0.90[ASN][1000 genomes]
rs2245216	0.81[CEU][hapmap]
rs2416985	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2476439	0.89[ASN][1000 genomes]
rs2476441	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs2476442	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2485746	0.81[AMR][1000 genomes]
rs2491095	0.85[ASN][1000 genomes]
rs2491096	0.82[ASN][1000 genomes]
rs2698999	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs2761053	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2761056	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787361	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787363	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[ASN][1000 genomes]
rs2787364	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2787365	0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.85[ASN][1000 genomes]
rs2787366	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787390	0.83[CHD][hapmap]
rs2787391	0.82[JPT][hapmap];0.86[YRI][hapmap]
rs2787393	0.80[ASN][1000 genomes]
rs2787394	0.82[JPT][hapmap];0.86[YRI][hapmap]
rs2787395	0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.80[ASN][1000 genomes]
rs2787396	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2787397	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2791335	0.91[ASN][1000 genomes]
rs2791336	0.96[ASN][1000 genomes]
rs2791337	0.96[ASN][1000 genomes]
rs2795575	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs2806681	1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs2806682	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs2806683	0.83[ASN][1000 genomes]
rs2806684	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2806685	0.80[ASN][1000 genomes]
rs2806687	1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2806688	0.82[ASN][1000 genomes]
rs2806691	0.84[CHD][hapmap]
rs2806693	0.92[CEU][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap]
rs28448789	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493819	0.84[ASN][1000 genomes]
rs3824510	0.89[ASN][1000 genomes]
rs41346545	0.96[ASN][1000 genomes]
rs4428721	0.81[ASW][hapmap]
rs4495492	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4503155	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4517187	1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.94[ASN][1000 genomes]
rs4742779	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4743375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743378	0.89[ASN][1000 genomes]
rs4743379	0.93[ASN][1000 genomes]
rs4743380	0.93[ASN][1000 genomes]
rs4743381	0.89[ASN][1000 genomes]
rs4743382	0.96[ASN][1000 genomes]
rs4743384	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743386	0.93[ASN][1000 genomes]
rs6478991	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478992	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6478993	0.82[AMR][1000 genomes]
rs6478994	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478995	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478996	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478997	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478998	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479002	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7018981	0.94[ASN][1000 genomes]
rs7022493	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025300	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027414	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029020	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029048	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033091	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036518	0.93[ASN][1000 genomes]
rs7037362	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042194	0.96[ASN][1000 genomes]
rs7042912	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044219	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045612	0.89[ASN][1000 genomes]
rs7047092	0.95[ASN][1000 genomes]
rs7846794	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7847213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7853485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856844	0.89[ASN][1000 genomes]
rs7857530	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858606	0.96[ASN][1000 genomes]
rs7859492	0.87[ASN][1000 genomes]
rs7861003	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7862460	0.96[ASN][1000 genomes]
rs7865257	0.81[ASW][hapmap]
rs7870585	0.95[ASN][1000 genomes]
rs7873746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs7874449	0.93[ASN][1000 genomes]
rs846752	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs846753	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs846754	0.93[ASN][1000 genomes]
rs846755	0.94[ASN][1000 genomes]
rs846756	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs846758	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs846759	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs846761	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs846762	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs846763	0.83[ASN][1000 genomes]
rs846765	0.81[AMR][1000 genomes]
rs846766	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs846768	0.89[ASN][1000 genomes]
rs846769	0.89[ASN][1000 genomes]
rs846770	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs860171	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs863668	0.89[ASN][1000 genomes]
rs9299337	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9408995	0.84[ASN][1000 genomes]
rs9409325	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs942163	0.96[ASN][1000 genomes]
rs9695692	0.89[ASN][1000 genomes]
rs9886877	1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7024016	INVS	cis	cerebellum	SCAN
rs7024016	STX17	cis	Esophagus Mucosa	GTEx
rs7024016	MURC	cis	parietal	SCAN
rs7024016	TBC1D22B	cis	Cerebellum	GTEx
rs7024016	STX17	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
3	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
4	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
5	chr9:102800200-102836400	Weak transcription	Fetal Stomach	stomach
6	chr9:102805400-102844800	Weak transcription	Thymus	Thymus
7	chr9:102807400-102844800	Weak transcription	Fetal Brain Male	brain
8	chr9:102809800-102845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:102810000-102839200	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:102810800-102845400	Weak transcription	Fetal Brain Female	brain
11	chr9:102814200-102842400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:102814200-102842600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:102814600-102834200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:102818000-102842000	Weak transcription	Spleen	Spleen
15	chr9:102820200-102842800	Weak transcription	HepG2	liver
16	chr9:102820800-102837400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr9:102820800-102846000	Weak transcription	Primary T cells from cord blood	blood
18	chr9:102821000-102845600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:102821800-102837000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:102822000-102833000	Weak transcription	Ovary	ovary
21	chr9:102822000-102838600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:102822000-102844000	Weak transcription	Fetal Thymus	thymus
23	chr9:102822000-102845800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:102822000-102849000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr9:102822200-102829800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:102822400-102842600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:102822400-102844000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr9:102825400-102844800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:102825800-102858200	Weak transcription	Fetal Intestine Small	intestine
30	chr9:102826200-102842000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr9:102826800-102830000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:102827600-102829400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:102827800-102832200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:102828200-102829600	Genic enhancers	Primary B cells from cord blood	blood
35	chr9:102828200-102832000	Weak transcription	NHEK	skin
36	chr9:102828200-102832200	Weak transcription	A549	lung
37	chr9:102828200-102832400	Weak transcription	HMEC	breast
38	chr9:102828400-102829400	Enhancers	Brain Angular Gyrus	brain
39	chr9:102828600-102829400	Enhancers	Brain Cingulate Gyrus	brain
40	chr9:102828600-102829400	Enhancers	Brain Substantia Nigra	brain
41	chr9:102828600-102829400	Enhancers	Dnd41	blood
42	chr9:102828600-102829600	Enhancers	Primary B cells from peripheral blood	blood
43	chr9:102828800-102829400	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr9:102828800-102829400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr9:102828800-102829400	Enhancers	Liver	Liver
46	chr9:102828800-102829400	Enhancers	Duodenum Mucosa	Duodenum
47	chr9:102828800-102829400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr9:102828800-102829400	Enhancers	Right Atrium	heart
49	chr9:102828800-102829400	Enhancers	Stomach Mucosa	stomach
50	chr9:102828800-102829400	Flanking Active TSS	NHDF-Ad	bronchial

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