Variant report

Variant	rs10819717
Chromosome Location	chr9:102777978-102777979
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 175 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs10116798	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10117150	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1014651	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1014652	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10156395	0.89[ASN][1000 genomes]
rs10739795	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739796	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs10760710	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760711	0.96[ASN][1000 genomes]
rs10760712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760720	0.89[ASN][1000 genomes]
rs10819714	0.96[ASN][1000 genomes]
rs10819715	0.96[ASN][1000 genomes]
rs10819716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819719	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10819737	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs10819739	0.89[ASN][1000 genomes]
rs10988945	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10988963	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988968	0.94[ASN][1000 genomes]
rs10988969	0.94[ASN][1000 genomes]
rs10988973	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs10988974	0.93[ASN][1000 genomes]
rs10989009	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1099910	0.83[ASN][1000 genomes]
rs11555502	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12336751	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12552646	1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[ASN][1000 genomes]
rs12685650	0.96[ASN][1000 genomes]
rs13301295	0.89[ASN][1000 genomes]
rs1338119	0.85[ASN][1000 genomes]
rs1342147	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs1361668	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1406613	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415926	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1418267	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529191	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.96[ASN][1000 genomes]
rs1529192	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529193	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1535667	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1539297	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1572607	0.87[ASN][1000 genomes]
rs1578644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578645	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578646	0.96[ASN][1000 genomes]
rs1852864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852865	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891334	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1999877	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2057476	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2093696	0.96[ASN][1000 genomes]
rs2096158	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104273	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181579	1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs2209082	0.90[ASN][1000 genomes]
rs2416985	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2476439	0.89[ASN][1000 genomes]
rs2476441	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs2476442	0.86[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2485746	0.81[AMR][1000 genomes]
rs2491095	0.85[ASN][1000 genomes]
rs2491096	0.82[ASN][1000 genomes]
rs2698999	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs2761053	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2761056	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787361	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787363	0.84[ASN][1000 genomes]
rs2787364	0.84[ASN][1000 genomes]
rs2787365	0.85[ASN][1000 genomes]
rs2787366	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787393	0.80[ASN][1000 genomes]
rs2787395	0.80[ASN][1000 genomes]
rs2787396	0.80[ASN][1000 genomes]
rs2787397	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2791335	0.91[ASN][1000 genomes]
rs2791336	0.96[ASN][1000 genomes]
rs2791337	0.96[ASN][1000 genomes]
rs2795575	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs2806681	0.84[ASN][1000 genomes]
rs2806682	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs2806683	0.83[ASN][1000 genomes]
rs2806684	0.84[ASN][1000 genomes]
rs2806685	0.80[ASN][1000 genomes]
rs2806687	0.80[ASN][1000 genomes]
rs2806688	0.82[ASN][1000 genomes]
rs28448789	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493819	0.84[ASN][1000 genomes]
rs3824510	0.89[ASN][1000 genomes]
rs41346545	0.96[ASN][1000 genomes]
rs4428721	0.81[ASW][hapmap]
rs4495492	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4503155	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4517187	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.94[ASN][1000 genomes]
rs4742779	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4743375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743376	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743378	0.89[ASN][1000 genomes]
rs4743379	0.93[ASN][1000 genomes]
rs4743380	0.93[ASN][1000 genomes]
rs4743381	0.89[ASN][1000 genomes]
rs4743382	0.96[ASN][1000 genomes]
rs4743384	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743386	0.93[ASN][1000 genomes]
rs6478991	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478992	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6478993	0.82[AMR][1000 genomes]
rs6478994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478995	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478996	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478997	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478998	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479000	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479002	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7018981	0.94[ASN][1000 genomes]
rs7022493	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024016	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025300	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027414	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029020	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032333	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033091	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036518	0.93[ASN][1000 genomes]
rs7037362	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042194	0.96[ASN][1000 genomes]
rs7042912	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043057	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044219	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045612	0.89[ASN][1000 genomes]
rs7047092	0.95[ASN][1000 genomes]
rs7846794	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7847213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7853485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856844	0.89[ASN][1000 genomes]
rs7857530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858606	0.96[ASN][1000 genomes]
rs7859492	0.87[ASN][1000 genomes]
rs7861003	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7862460	0.96[ASN][1000 genomes]
rs7865257	0.81[ASW][hapmap]
rs7870585	0.95[ASN][1000 genomes]
rs7873746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs7874449	0.93[ASN][1000 genomes]
rs846752	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs846753	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs846754	0.93[ASN][1000 genomes]
rs846755	0.94[ASN][1000 genomes]
rs846756	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs846758	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs846759	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs846761	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs846762	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs846763	0.83[ASN][1000 genomes]
rs846765	0.81[AMR][1000 genomes]
rs846766	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs846768	0.89[ASN][1000 genomes]
rs846769	0.89[ASN][1000 genomes]
rs846770	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs860171	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs863668	0.89[ASN][1000 genomes]
rs9299337	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9408995	0.84[ASN][1000 genomes]
rs9409325	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs942163	0.96[ASN][1000 genomes]
rs9695692	0.89[ASN][1000 genomes]
rs9886877	1.00[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.96[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10819717	STX17	cis	Esophagus Mucosa	GTEx
rs10819717	MURC	cis	parietal	SCAN
rs10819717	STX17	cis	Stomach	GTEx
rs10819717	INVS	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102729600-102826800	Weak transcription	HMEC	breast
2	chr9:102731000-102778200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr9:102757400-102790600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:102760800-102783400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:102761000-102778200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:102762000-102790000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:102763400-102783400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:102764200-102783200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:102766200-102778200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:102766400-102783400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:102766400-102784600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr9:102766400-102785400	Weak transcription	Fetal Brain Male	brain
13	chr9:102766400-102787000	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:102766400-102794800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:102766600-102787200	Weak transcription	Psoas Muscle	Psoas
16	chr9:102766800-102783400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:102766800-102784600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr9:102766800-102793000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:102767000-102778000	Weak transcription	Fetal Stomach	stomach
20	chr9:102767000-102778200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:102767000-102781400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:102767000-102783400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:102767000-102783400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:102767000-102783400	Weak transcription	NHEK	skin
25	chr9:102767000-102785200	Weak transcription	Brain Substantia Nigra	brain
26	chr9:102767000-102785400	Weak transcription	Brain Germinal Matrix	brain
27	chr9:102767000-102787800	Weak transcription	Right Ventricle	heart
28	chr9:102767000-102799400	Weak transcription	Spleen	Spleen
29	chr9:102767000-102820400	Weak transcription	Colonic Mucosa	Colon
30	chr9:102767200-102784800	Weak transcription	A549	lung
31	chr9:102767200-102789800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:102767200-102821800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:102767600-102778000	Weak transcription	Aorta	Aorta
34	chr9:102767600-102778000	Weak transcription	Esophagus	oesophagus
35	chr9:102767600-102781800	Weak transcription	HepG2	liver
36	chr9:102767600-102783400	Weak transcription	Lung	lung
37	chr9:102767600-102785800	Weak transcription	Pancreas	Pancrea
38	chr9:102767600-102788200	Weak transcription	Brain Angular Gyrus	brain
39	chr9:102767600-102790200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:102767600-102790400	Weak transcription	Brain Anterior Caudate	brain
41	chr9:102767600-102796000	Weak transcription	Gastric	stomach
42	chr9:102767600-102799400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr9:102767600-102800400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:102767600-102826400	Weak transcription	Small Intestine	intestine
45	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr9:102767800-102778000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr9:102767800-102778600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
49	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
50	chr9:102769600-102778000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links