Variant report

Variant	rs2476442
Chromosome Location	chr9:102934290-102934291
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr9:102934193-102934423	SH-SY5Y	brain:	n/a	chr9:102934366-102934375 chr9:102934368-102934378

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102928719..102931387-chr9:102934032..102935585,2	K562	blood:

Variant related genes	Relation type
NANOGP5	TF binding region

Extended variants
information (count: 199 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10116798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117150	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014651	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1014652	0.96[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10156395	0.81[ASN][1000 genomes]
rs10739795	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10739796	0.84[CEU][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10760710	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10760711	0.89[ASN][1000 genomes]
rs10760712	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10760720	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819714	0.89[ASN][1000 genomes]
rs10819715	0.89[ASN][1000 genomes]
rs10819716	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10819717	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10819719	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10819737	0.84[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819739	0.96[ASN][1000 genomes]
rs10819751	0.85[AMR][1000 genomes]
rs10988945	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs10988963	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10988968	0.87[ASN][1000 genomes]
rs10988969	0.87[ASN][1000 genomes]
rs10988973	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10988974	0.86[ASN][1000 genomes]
rs10989009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1099909	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1099910	0.89[ASN][1000 genomes]
rs12336751	0.96[CEU][hapmap];0.82[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552646	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs12685650	0.89[ASN][1000 genomes]
rs13301295	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338119	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1338123	0.81[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs1338124	0.81[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1338125	0.91[CEU][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1342147	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1361668	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1406613	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1415926	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418267	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1529191	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1529192	0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1529193	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1534726	0.81[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1535667	0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs1539297	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1572607	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1578644	0.81[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1578645	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1578646	0.89[ASN][1000 genomes]
rs1852864	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1852865	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1891334	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1930243	0.82[JPT][hapmap]
rs1999877	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2057476	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2093696	0.89[ASN][1000 genomes]
rs2096158	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2104273	0.89[ASN][1000 genomes]
rs2181579	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2209082	0.83[ASN][1000 genomes]
rs2245216	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2476439	0.96[ASN][1000 genomes]
rs2476441	0.83[CEU][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485745	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2485746	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2491095	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2491096	0.89[ASN][1000 genomes]
rs2698999	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2761053	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2761056	0.84[CEU][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2787361	0.83[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2787363	0.84[CEU][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2787364	0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs2787365	0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2787366	0.83[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2787368	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2787369	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2787371	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2787372	0.83[EUR][1000 genomes]
rs2787373	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2787375	0.82[JPT][hapmap]
rs2787377	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2787380	0.81[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787381	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787383	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787385	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2787388	0.85[EUR][1000 genomes]
rs2787391	0.83[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2787393	0.87[ASN][1000 genomes]
rs2787394	0.83[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2787395	0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2787396	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2787397	0.91[CEU][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2791335	0.84[ASN][1000 genomes]
rs2791336	0.89[ASN][1000 genomes]
rs2791337	0.89[ASN][1000 genomes]
rs2795575	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs2806681	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2806682	0.84[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2806683	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806684	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2806685	0.87[ASN][1000 genomes]
rs2806687	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2806688	0.89[ASN][1000 genomes]
rs2806692	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806693	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806694	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806695	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2806696	0.81[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806703	0.82[JPT][hapmap]
rs28448789	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3813712	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3824510	0.81[ASN][1000 genomes]
rs41346545	0.89[ASN][1000 genomes]
rs4495492	0.86[ASN][1000 genomes]
rs4503155	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4517187	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4742779	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4743375	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4743376	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4743378	0.81[ASN][1000 genomes]
rs4743379	0.85[ASN][1000 genomes]
rs4743380	0.85[ASN][1000 genomes]
rs4743381	0.83[ASN][1000 genomes]
rs4743382	0.89[ASN][1000 genomes]
rs4743384	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4743386	0.86[ASN][1000 genomes]
rs6478991	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6478994	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6478995	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6478996	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6478997	0.89[ASN][1000 genomes]
rs6478998	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6479000	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6479001	0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6479002	0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7018981	0.87[ASN][1000 genomes]
rs7022493	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7024016	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7025300	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7026532	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7027414	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7029020	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7029048	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7032333	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7033091	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs7036518	0.86[ASN][1000 genomes]
rs7037362	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7041338	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7042194	0.89[ASN][1000 genomes]
rs7042912	0.89[ASN][1000 genomes]
rs7043057	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7044219	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7045612	0.81[ASN][1000 genomes]
rs7047092	0.88[ASN][1000 genomes]
rs7846794	0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7847213	0.81[CEU][hapmap];0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7853485	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7856844	0.96[ASN][1000 genomes]
rs7857530	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7858606	0.89[ASN][1000 genomes]
rs7859492	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7861003	0.91[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7862460	0.89[ASN][1000 genomes]
rs7864494	0.82[JPT][hapmap]
rs7870585	0.88[ASN][1000 genomes]
rs7874449	0.86[ASN][1000 genomes]
rs846751	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs846752	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846753	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs846754	0.86[ASN][1000 genomes]
rs846755	0.87[ASN][1000 genomes]
rs846756	0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846758	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846759	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs846761	0.84[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846762	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs846763	0.89[ASN][1000 genomes]
rs846765	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846766	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs846768	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846769	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846770	0.84[CEU][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860171	0.84[CEU][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs863668	0.96[ASN][1000 genomes]
rs9299337	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9408995	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9409325	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs942163	0.89[ASN][1000 genomes]
rs946054	0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs9695692	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886877	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2476442	STX17	cis	Esophagus Mucosa	GTEx
rs2476442	INVS	cis	multi-tissue	Pritchard
rs2476442	STX17	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102874200-102937600	Weak transcription	Aorta	Aorta
2	chr9:102879800-102935000	Weak transcription	Ovary	ovary
3	chr9:102883000-102937600	Weak transcription	Fetal Intestine Large	intestine
4	chr9:102889200-102936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:102889600-102934600	Weak transcription	Fetal Intestine Small	intestine
6	chr9:102891800-102935200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:102893000-102934600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:102893800-102936200	Weak transcription	Primary B cells from cord blood	blood
9	chr9:102912400-102937800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:102912800-102936200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:102913200-102935400	Weak transcription	Fetal Lung	lung
12	chr9:102914600-102940600	Weak transcription	HSMMtube	muscle
13	chr9:102915200-102934800	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:102915200-102935400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:102916200-102935400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:102916200-102941400	Weak transcription	HepG2	liver
17	chr9:102916400-102934800	Weak transcription	Left Ventricle	heart
18	chr9:102916400-102938200	Weak transcription	Adipose Nuclei	Adipose
19	chr9:102917400-102935000	Weak transcription	Liver	Liver
20	chr9:102917400-102936000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:102919400-102936000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:102920600-102936000	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:102921200-102934800	Weak transcription	Psoas Muscle	Psoas
24	chr9:102921200-102938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:102922600-102935200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr9:102922800-102935200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:102922800-102936000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:102924200-102935400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr9:102928600-102934800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr9:102929000-102935000	Weak transcription	Primary T cells from cord blood	blood
31	chr9:102929600-102938000	Weak transcription	Thymus	Thymus
32	chr9:102930400-102937600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:102930600-102940000	Weak transcription	Pancreas	Pancrea
34	chr9:102930800-102938000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr9:102931000-102934800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:102931000-102936400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr9:102931000-102941000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:102931200-102936000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:102931400-102935200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:102931800-102936200	Weak transcription	Fetal Kidney	kidney
41	chr9:102932200-102935400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:102932200-102941200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:102932600-102939800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:102932800-102935000	Weak transcription	Dnd41	blood
45	chr9:102932800-102936000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:102933400-102935000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr9:102933400-102939000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:102933400-102942000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr9:102933600-102941000	Weak transcription	Spleen	Spleen
50	chr9:102933800-102936400	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links