Variant report

Variant	rs846751
Chromosome Location	chr9:102900565-102900566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102899936..102901498-chr9:102977241..102979211,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10116798	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10117150	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1014652	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10739796	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10760720	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10819737	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10819751	0.81[AMR][1000 genomes]
rs10988963	0.83[AMR][1000 genomes]
rs10989009	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1099909	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12336751	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13301295	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1338119	0.95[AMR][1000 genomes]
rs1338124	0.83[AMR][1000 genomes]
rs1338125	0.82[AMR][1000 genomes]
rs1415926	0.95[AMR][1000 genomes]
rs1529192	0.83[AMR][1000 genomes]
rs1529193	0.83[AMR][1000 genomes]
rs1534726	0.83[AMR][1000 genomes]
rs1891334	0.87[AMR][1000 genomes]
rs2096158	0.83[AMR][1000 genomes]
rs2245216	0.82[AMR][1000 genomes]
rs2476441	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2476442	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2485745	0.84[AMR][1000 genomes]
rs2485746	0.85[AMR][1000 genomes]
rs2491095	0.99[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2761053	0.90[AMR][1000 genomes]
rs2761056	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2787361	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2787363	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787365	0.99[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2787366	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2787368	0.82[AMR][1000 genomes]
rs2787369	0.86[AMR][1000 genomes]
rs2787371	0.83[AMR][1000 genomes]
rs2787372	0.81[AMR][1000 genomes]
rs2787380	0.83[AMR][1000 genomes]
rs2787381	0.86[AMR][1000 genomes]
rs2787383	0.84[AMR][1000 genomes]
rs2787385	0.86[AMR][1000 genomes]
rs2787388	0.82[AMR][1000 genomes]
rs2787391	0.88[AMR][1000 genomes]
rs2787394	0.91[AMR][1000 genomes]
rs2787395	0.99[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2787397	0.95[AMR][1000 genomes]
rs2806682	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806683	0.99[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2806692	0.84[AMR][1000 genomes]
rs2806693	0.84[AMR][1000 genomes]
rs2806694	0.86[AMR][1000 genomes]
rs2806695	0.82[AMR][1000 genomes]
rs2806696	0.83[AMR][1000 genomes]
rs2806702	0.81[AMR][1000 genomes]
rs28448789	0.83[AMR][1000 genomes]
rs4743384	0.82[AMR][1000 genomes]
rs6479001	0.87[AMR][1000 genomes]
rs6479002	0.87[AMR][1000 genomes]
rs7022493	0.83[AMR][1000 genomes]
rs7044219	0.83[AMR][1000 genomes]
rs7846794	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7847213	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7859492	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7861003	0.90[AMR][1000 genomes]
rs846752	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs846753	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs846756	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs846758	0.82[AMR][1000 genomes]
rs846761	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs846765	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs846768	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs846769	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs846770	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs860171	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9299337	0.95[AMR][1000 genomes]
rs9408995	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9409325	0.95[AMR][1000 genomes]
rs9695692	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9886877	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102862200-102902400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102869200-102901800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:102870000-102902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:102874200-102902600	Weak transcription	HMEC	breast
5	chr9:102874200-102902600	Weak transcription	NHEK	skin
6	chr9:102874200-102912600	Weak transcription	Osteobl	bone
7	chr9:102874200-102937600	Weak transcription	Aorta	Aorta
8	chr9:102879800-102935000	Weak transcription	Ovary	ovary
9	chr9:102881400-102902200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:102883000-102937600	Weak transcription	Fetal Intestine Large	intestine
11	chr9:102883800-102928400	Weak transcription	Primary T cells from cord blood	blood
12	chr9:102884400-102901800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:102885200-102932600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:102886000-102931600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:102887000-102901800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:102887800-102903400	Weak transcription	Pancreas	Pancrea
17	chr9:102887800-102922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:102888000-102902600	Weak transcription	HepG2	liver
19	chr9:102889000-102902000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:102889000-102907000	Weak transcription	K562	blood
21	chr9:102889200-102901600	Weak transcription	Hela-S3	cervix
22	chr9:102889200-102936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:102889600-102934600	Weak transcription	Fetal Intestine Small	intestine
24	chr9:102891000-102904600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr9:102891800-102935200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr9:102892200-102900600	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:102892200-102909200	Weak transcription	Fetal Stomach	stomach
28	chr9:102893000-102934600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr9:102893800-102936200	Weak transcription	Primary B cells from cord blood	blood
30	chr9:102894200-102901600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr9:102895200-102920600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:102895600-102903800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr9:102895800-102902200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:102896400-102902000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:102896400-102902400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:102897000-102901800	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:102898400-102901800	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:102898800-102902000	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr9:102899200-102901800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr9:102899800-102901800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr9:102899800-102901800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:102899800-102902200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:102899800-102904000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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