Variant report

Variant	rs1342147
Chromosome Location	chr9:102844842-102844843
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102843499..102845016-chr9:102860517..102862387,2	MCF-7	breast:
2	chr9:102836320..102838449-chr9:102843922..102846451,2	K562	blood:

Variant related genes	Relation type
ENSG00000023318	Chromatin interaction
ENSG00000119509	Chromatin interaction

Extended variants
information (count: 208 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs10116798	0.89[ASN][1000 genomes]
rs10117150	0.89[ASN][1000 genomes]
rs10117828	0.82[YRI][hapmap]
rs10120103	0.82[YRI][hapmap]
rs10121601	0.82[YRI][hapmap]
rs10121880	0.82[YRI][hapmap]
rs10123261	0.82[YRI][hapmap]
rs1014651	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1014652	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10156395	0.86[ASN][1000 genomes]
rs10217337	0.82[YRI][hapmap]
rs10217692	0.82[YRI][hapmap]
rs10512268	0.82[YRI][hapmap]
rs10739795	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs10739796	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10760704	0.81[YRI][hapmap]
rs10760710	0.96[ASN][1000 genomes]
rs10760711	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760712	0.96[ASN][1000 genomes]
rs10760720	0.89[ASN][1000 genomes]
rs10819714	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819715	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819716	0.96[ASN][1000 genomes]
rs10819717	0.96[ASN][1000 genomes]
rs10819719	0.95[ASN][1000 genomes]
rs10819737	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs10819739	0.93[ASN][1000 genomes]
rs10988934	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10988945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988963	0.96[ASN][1000 genomes]
rs10988968	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988969	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988973	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10988974	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10989009	0.89[ASN][1000 genomes]
rs1099910	0.86[ASN][1000 genomes]
rs11555502	0.82[ASN][1000 genomes]
rs12336751	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12552646	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12685650	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301295	0.89[ASN][1000 genomes]
rs1338119	0.86[ASN][1000 genomes]
rs1338121	0.84[CEU][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap]
rs1338125	0.82[CHD][hapmap]
rs1361668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1406613	0.96[ASN][1000 genomes]
rs1415926	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1418267	0.96[ASN][1000 genomes]
rs1529191	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529192	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs1529193	0.96[ASN][1000 genomes]
rs1534726	0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs1535667	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1539297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1572607	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.91[ASN][1000 genomes]
rs1578644	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1578645	0.96[ASN][1000 genomes]
rs1578646	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830454	0.82[YRI][hapmap]
rs1852863	0.82[YRI][hapmap]
rs1852864	0.96[ASN][1000 genomes]
rs1852865	0.96[ASN][1000 genomes]
rs1891334	0.88[ASN][1000 genomes]
rs1997367	0.82[YRI][hapmap]
rs1997368	0.82[YRI][hapmap]
rs1999877	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.89[ASN][1000 genomes]
rs2057476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2093696	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096158	0.96[ASN][1000 genomes]
rs2104273	0.96[ASN][1000 genomes]
rs2181579	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2209082	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2416935	0.87[YRI][hapmap]
rs2416936	0.82[YRI][hapmap]
rs2416937	0.82[YRI][hapmap]
rs2416940	0.82[YRI][hapmap]
rs2476439	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2476441	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2476442	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs2485745	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs2491095	0.86[ASN][1000 genomes]
rs2491096	0.86[ASN][1000 genomes]
rs2698999	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2761053	0.93[ASN][1000 genomes]
rs2761056	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2787361	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs2787363	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2787364	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.87[ASN][1000 genomes]
rs2787365	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs2787366	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs2787382	0.84[CEU][hapmap]
rs2787384	0.84[CEU][hapmap]
rs2787390	0.83[CHD][hapmap]
rs2787391	0.82[JPT][hapmap]
rs2787393	0.84[ASN][1000 genomes]
rs2787394	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2787395	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs2787396	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2787397	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2791335	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2791336	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791337	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2795575	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806681	0.96[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[ASN][1000 genomes]
rs2806682	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2806683	0.84[ASN][1000 genomes]
rs2806684	0.95[CEU][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2806685	0.84[ASN][1000 genomes]
rs2806687	0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.84[ASN][1000 genomes]
rs2806688	0.82[ASN][1000 genomes]
rs2806691	0.84[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.90[MEX][hapmap]
rs2806693	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs2806694	0.85[JPT][hapmap]
rs28448789	0.96[ASN][1000 genomes]
rs35493819	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3824510	0.86[ASN][1000 genomes]
rs41346545	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282626	0.82[YRI][hapmap]
rs4452862	0.82[YRI][hapmap]
rs4495492	0.93[ASN][1000 genomes]
rs4503155	0.96[ASN][1000 genomes]
rs4517187	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4585797	0.82[YRI][hapmap]
rs4742777	0.82[YRI][hapmap]
rs4742778	0.82[YRI][hapmap]
rs4742779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743370	0.82[YRI][hapmap]
rs4743375	0.96[ASN][1000 genomes]
rs4743376	0.96[ASN][1000 genomes]
rs4743378	0.86[ASN][1000 genomes]
rs4743379	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743380	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743381	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743382	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743384	0.88[ASN][1000 genomes]
rs4743386	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478991	0.96[ASN][1000 genomes]
rs6478994	0.96[ASN][1000 genomes]
rs6478995	0.96[ASN][1000 genomes]
rs6478996	0.96[ASN][1000 genomes]
rs6478997	0.96[ASN][1000 genomes]
rs6478998	0.96[ASN][1000 genomes]
rs6479000	0.96[ASN][1000 genomes]
rs6479001	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs6479002	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs7018981	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7022493	0.96[ASN][1000 genomes]
rs7024016	0.96[ASN][1000 genomes]
rs7025300	0.96[ASN][1000 genomes]
rs7026532	0.96[ASN][1000 genomes]
rs7027414	0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs7027619	0.82[YRI][hapmap]
rs7029020	0.96[ASN][1000 genomes]
rs7029048	0.96[ASN][1000 genomes]
rs7032333	0.96[ASN][1000 genomes]
rs7033091	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs7036518	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7037362	0.96[ASN][1000 genomes]
rs7039716	0.87[YRI][hapmap]
rs7041338	0.96[ASN][1000 genomes]
rs7042194	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042912	0.96[ASN][1000 genomes]
rs7043057	0.96[ASN][1000 genomes]
rs7044219	0.96[ASN][1000 genomes]
rs7045612	0.86[ASN][1000 genomes]
rs7047092	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7846794	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs7847213	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7853485	0.95[ASN][1000 genomes]
rs7856844	0.93[ASN][1000 genomes]
rs7857530	0.96[ASN][1000 genomes]
rs7858606	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859492	0.87[ASN][1000 genomes]
rs7861003	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7862460	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870585	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7873746	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs7874449	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846752	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs846753	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs846754	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846755	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs846756	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs846758	0.93[ASN][1000 genomes]
rs846759	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs846761	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs846762	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs846763	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs846766	0.87[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846768	0.89[ASN][1000 genomes]
rs846769	0.89[ASN][1000 genomes]
rs846770	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs860171	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs863668	0.93[ASN][1000 genomes]
rs9299335	0.82[YRI][hapmap]
rs9299337	0.81[ASN][1000 genomes]
rs9408993	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9408995	0.84[ASN][1000 genomes]
rs9409325	0.81[ASN][1000 genomes]
rs942163	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556	0.87[YRI][hapmap]
rs9695692	0.89[ASN][1000 genomes]
rs9886877	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1342147	STX17	cis	Esophagus Mucosa	GTEx
rs1342147	CTSL2	cis	cerebellum	SCAN

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
3	chr9:102809800-102845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:102810800-102845400	Weak transcription	Fetal Brain Female	brain
5	chr9:102820800-102846000	Weak transcription	Primary T cells from cord blood	blood
6	chr9:102821000-102845600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:102822000-102845800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:102822000-102849000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:102825800-102858200	Weak transcription	Fetal Intestine Small	intestine
10	chr9:102829200-102845800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:102829200-102850600	Weak transcription	Aorta	Aorta
12	chr9:102829400-102848800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:102829400-102849200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:102829400-102849600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr9:102829400-102849800	Weak transcription	Stomach Mucosa	stomach
16	chr9:102833200-102845800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:102836000-102845600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:102836000-102859000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:102836800-102849000	Weak transcription	Fetal Lung	lung
20	chr9:102837000-102849800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:102837000-102859600	Weak transcription	Brain Anterior Caudate	brain
22	chr9:102837200-102860200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr9:102837600-102845400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:102837600-102846200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr9:102837800-102845800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:102837800-102845800	Weak transcription	Right Ventricle	heart
27	chr9:102838800-102852200	Weak transcription	Adipose Nuclei	Adipose
28	chr9:102839000-102846000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr9:102839000-102846000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:102839600-102846000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:102839600-102860000	Weak transcription	Fetal Stomach	stomach
32	chr9:102839800-102860200	Weak transcription	Right Atrium	heart
33	chr9:102840200-102845600	Enhancers	Primary B cells from cord blood	blood
34	chr9:102840200-102845800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:102840600-102855600	Weak transcription	Lung	lung
36	chr9:102841200-102845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:102842000-102850200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr9:102842200-102850600	Weak transcription	Left Ventricle	heart
39	chr9:102842200-102855600	Weak transcription	Gastric	stomach
40	chr9:102842400-102851600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr9:102842600-102851400	Weak transcription	Psoas Muscle	Psoas
42	chr9:102842800-102845400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:102842800-102845400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:102842800-102845800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr9:102843200-102845200	Weak transcription	Brain Substantia Nigra	brain
46	chr9:102843200-102846000	Weak transcription	Brain Angular Gyrus	brain
47	chr9:102843200-102850200	Weak transcription	Spleen	Spleen
48	chr9:102843200-102851800	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr9:102843600-102845800	Enhancers	Colon Smooth Muscle	Colon
50	chr9:102843600-102848000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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