Variant report

Variant	rs2787382
Chromosome Location	chr9:103039197-103039198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103037852..103042243-chr9:103042555..103047658,4	K562	blood:
2	chr9:103037474..103040189-chr9:103187974..103190898,2	K562	blood:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10117799	0.86[ASN][1000 genomes]
rs10118701	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs10123866	0.86[ASN][1000 genomes]
rs10123913	0.86[ASN][1000 genomes]
rs10124893	0.84[ASN][1000 genomes]
rs10125785	0.84[ASN][1000 genomes]
rs10760724	0.81[ASN][1000 genomes]
rs10819739	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10819751	0.87[ASN][1000 genomes]
rs10819759	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs10988973	0.84[CEU][hapmap]
rs10989049	0.84[ASN][1000 genomes]
rs10989064	0.86[CHB][hapmap]
rs10989067	0.88[CHB][hapmap]
rs1099910	0.81[EUR][1000 genomes]
rs11789196	0.86[ASN][1000 genomes]
rs12552646	0.84[CEU][hapmap]
rs1338121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338123	0.87[ASN][1000 genomes]
rs1338124	0.87[ASN][1000 genomes]
rs1338125	0.87[ASN][1000 genomes]
rs1338126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342147	0.84[CEU][hapmap]
rs1361668	0.85[CEU][hapmap]
rs1529191	0.84[CEU][hapmap]
rs1535667	0.89[CEU][hapmap]
rs1539297	0.85[CEU][hapmap]
rs1572607	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1999877	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2057476	0.85[CEU][hapmap]
rs2065997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2181579	0.84[CEU][hapmap]
rs2245216	0.86[ASN][1000 genomes]
rs2476439	0.81[AMR][1000 genomes]
rs2485745	0.84[ASN][1000 genomes]
rs2491096	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2491098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2787364	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2787368	0.83[ASN][1000 genomes]
rs2787369	0.83[ASN][1000 genomes]
rs2787371	0.84[ASN][1000 genomes]
rs2787372	0.86[ASN][1000 genomes]
rs2787373	0.86[ASN][1000 genomes]
rs2787374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2787375	0.86[ASN][1000 genomes]
rs2787377	0.84[ASN][1000 genomes]
rs2787379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2787380	0.86[ASN][1000 genomes]
rs2787381	0.86[ASN][1000 genomes]
rs2787383	0.87[ASN][1000 genomes]
rs2787384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2787385	0.86[ASN][1000 genomes]
rs2787386	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2787388	0.87[ASN][1000 genomes]
rs2787393	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2787396	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806681	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806684	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806685	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806687	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806688	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806689	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806692	0.87[ASN][1000 genomes]
rs2806693	0.84[ASN][1000 genomes]
rs2806694	0.84[ASN][1000 genomes]
rs2806695	0.86[ASN][1000 genomes]
rs2806696	0.87[ASN][1000 genomes]
rs2806697	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2806699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2806700	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2806701	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806702	0.84[ASN][1000 genomes]
rs2806703	0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3813712	0.84[ASN][1000 genomes]
rs3923501	0.84[ASN][1000 genomes]
rs4128230	0.81[ASN][1000 genomes]
rs4237195	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs4446782	0.84[ASN][1000 genomes]
rs4517187	0.84[CEU][hapmap]
rs4742782	0.86[ASN][1000 genomes]
rs4742784	0.88[CHB][hapmap]
rs4743392	0.84[ASN][1000 genomes]
rs4743393	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs4743395	0.88[CHB][hapmap]
rs5029342	0.86[ASN][1000 genomes]
rs5029343	0.84[ASN][1000 genomes]
rs6479008	0.83[ASN][1000 genomes]
rs6479009	0.84[ASN][1000 genomes]
rs7020988	0.84[ASN][1000 genomes]
rs7025938	0.86[ASN][1000 genomes]
rs7035619	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs7472	0.86[ASN][1000 genomes]
rs7849966	0.84[ASN][1000 genomes]
rs7854693	0.86[ASN][1000 genomes]
rs7856844	0.80[EUR][1000 genomes]
rs7864494	0.86[ASN][1000 genomes]
rs7865678	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs846759	0.89[CEU][hapmap]
rs846762	0.89[CEU][hapmap]
rs846766	0.85[CEU][hapmap]
rs9408998	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs946054	0.86[ASN][1000 genomes]
rs9775014	0.81[ASN][1000 genomes]
rs9775182	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
2	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
4	chr9:102975800-103045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:102976800-103047800	Weak transcription	Fetal Heart	heart
6	chr9:102979400-103054600	Weak transcription	NHEK	skin
7	chr9:102987400-103045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:102987400-103054600	Weak transcription	Gastric	stomach
9	chr9:102989400-103047200	Weak transcription	GM12878-XiMat	blood
10	chr9:102994800-103046600	Weak transcription	Pancreas	Pancrea
11	chr9:102997800-103054400	Weak transcription	Colonic Mucosa	Colon
12	chr9:103003400-103046800	Weak transcription	HMEC	breast
13	chr9:103006000-103039200	Weak transcription	HSMM	muscle
14	chr9:103008800-103039600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:103009400-103047600	Weak transcription	HUVEC	blood vessel
16	chr9:103013000-103047400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:103015000-103046800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:103015400-103039200	Weak transcription	Osteobl	bone
19	chr9:103015400-103039800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:103015400-103046400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:103015400-103046600	Weak transcription	Brain Substantia Nigra	brain
22	chr9:103015400-103046800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:103015600-103039400	Weak transcription	NH-A	brain
24	chr9:103015600-103046600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr9:103016000-103044400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:103016000-103047200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:103021200-103041200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:103021800-103044400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:103021800-103044400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:103022000-103047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:103023800-103046200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:103026200-103047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:103027800-103039200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:103027800-103046600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr9:103027800-103046600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:103028000-103040800	Weak transcription	A549	lung
37	chr9:103028000-103044800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr9:103028000-103046400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:103028200-103039200	Weak transcription	NHLF	lung
40	chr9:103028200-103046200	Weak transcription	Fetal Kidney	kidney
41	chr9:103028400-103046200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:103028600-103044600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:103028600-103046400	Weak transcription	Brain Germinal Matrix	brain
44	chr9:103029000-103053600	Weak transcription	Hela-S3	cervix
45	chr9:103029200-103041200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:103029200-103041600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr9:103029200-103046000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr9:103029200-103046600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr9:103029200-103047000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr9:103029200-103047600	Weak transcription	Rectal Smooth Muscle	rectum

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