Variant report

Variant	rs2787379
Chromosome Location	chr9:103046081-103046082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103037852..103042243-chr9:103042555..103047658,4	K562	blood:
2	chr9:103039312..103042243-chr9:103045251..103047658,2	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10117799	0.86[ASN][1000 genomes]
rs10118701	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs10123866	0.86[ASN][1000 genomes]
rs10123913	0.86[ASN][1000 genomes]
rs10124893	0.85[ASN][1000 genomes]
rs10125785	0.85[ASN][1000 genomes]
rs10760724	0.82[ASN][1000 genomes]
rs10819739	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10819751	0.85[ASN][1000 genomes]
rs10819759	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs10819761	0.80[ASN][1000 genomes]
rs10988973	0.84[CEU][hapmap]
rs10989049	0.85[ASN][1000 genomes]
rs10989064	0.86[CHB][hapmap]
rs10989067	0.88[CHB][hapmap]
rs11789196	0.86[ASN][1000 genomes]
rs12552646	0.84[CEU][hapmap]
rs1338121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338123	0.85[ASN][1000 genomes]
rs1338124	0.85[ASN][1000 genomes]
rs1338125	0.85[ASN][1000 genomes]
rs1338126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1361668	0.85[CEU][hapmap]
rs1535667	0.89[CEU][hapmap]
rs1539297	0.85[CEU][hapmap]
rs1572607	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1999877	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2057476	0.85[CEU][hapmap]
rs2065997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2181579	0.84[CEU][hapmap]
rs2245216	0.83[ASN][1000 genomes]
rs2476439	0.81[AMR][1000 genomes]
rs2485745	0.82[ASN][1000 genomes]
rs2491096	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2491098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2787364	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2787368	0.86[ASN][1000 genomes]
rs2787369	0.86[ASN][1000 genomes]
rs2787371	0.88[ASN][1000 genomes]
rs2787372	0.86[ASN][1000 genomes]
rs2787373	0.86[ASN][1000 genomes]
rs2787374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2787375	0.86[ASN][1000 genomes]
rs2787377	0.85[ASN][1000 genomes]
rs2787380	0.86[ASN][1000 genomes]
rs2787381	0.86[ASN][1000 genomes]
rs2787382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2787383	0.85[ASN][1000 genomes]
rs2787384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2787385	0.83[ASN][1000 genomes]
rs2787386	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2787388	0.85[ASN][1000 genomes]
rs2787393	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2787396	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806681	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2806684	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806685	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806687	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806688	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2806689	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2806690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2806691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2806692	0.85[ASN][1000 genomes]
rs2806693	0.82[ASN][1000 genomes]
rs2806694	0.82[ASN][1000 genomes]
rs2806695	0.83[ASN][1000 genomes]
rs2806696	0.85[ASN][1000 genomes]
rs2806697	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2806699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806700	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2806701	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806702	0.85[ASN][1000 genomes]
rs2806703	0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28464821	0.80[ASN][1000 genomes]
rs3813712	0.85[ASN][1000 genomes]
rs3923501	0.85[ASN][1000 genomes]
rs4128230	0.82[ASN][1000 genomes]
rs4237195	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs4446782	0.85[ASN][1000 genomes]
rs4517187	0.84[CEU][hapmap]
rs4742782	0.86[ASN][1000 genomes]
rs4742784	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs4743392	0.85[ASN][1000 genomes]
rs4743393	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs4743394	0.80[ASN][1000 genomes]
rs4743395	0.88[CHB][hapmap]
rs5029342	0.86[ASN][1000 genomes]
rs5029343	0.85[ASN][1000 genomes]
rs59242794	0.80[ASN][1000 genomes]
rs6479008	0.83[ASN][1000 genomes]
rs6479009	0.85[ASN][1000 genomes]
rs7020988	0.85[ASN][1000 genomes]
rs7025938	0.86[ASN][1000 genomes]
rs7035619	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs7048601	0.80[ASN][1000 genomes]
rs7472	0.86[ASN][1000 genomes]
rs7849966	0.85[ASN][1000 genomes]
rs7854693	0.86[ASN][1000 genomes]
rs7864494	0.86[ASN][1000 genomes]
rs7865678	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs846759	0.89[CEU][hapmap]
rs846762	0.89[CEU][hapmap]
rs846766	0.85[CEU][hapmap]
rs9408998	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs946054	0.86[ASN][1000 genomes]
rs9775014	0.82[ASN][1000 genomes]
rs9775182	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
2	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
4	chr9:102976800-103047800	Weak transcription	Fetal Heart	heart
5	chr9:102979400-103054600	Weak transcription	NHEK	skin
6	chr9:102987400-103054600	Weak transcription	Gastric	stomach
7	chr9:102989400-103047200	Weak transcription	GM12878-XiMat	blood
8	chr9:102994800-103046600	Weak transcription	Pancreas	Pancrea
9	chr9:102997800-103054400	Weak transcription	Colonic Mucosa	Colon
10	chr9:103003400-103046800	Weak transcription	HMEC	breast
11	chr9:103009400-103047600	Weak transcription	HUVEC	blood vessel
12	chr9:103013000-103047400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:103015000-103046800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:103015400-103046400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:103015400-103046600	Weak transcription	Brain Substantia Nigra	brain
16	chr9:103015400-103046800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:103015600-103046600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr9:103016000-103047200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:103022000-103047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:103023800-103046200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:103026200-103047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:103027800-103046600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr9:103027800-103046600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr9:103028000-103046400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:103028200-103046200	Weak transcription	Fetal Kidney	kidney
26	chr9:103028400-103046200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:103028600-103046400	Weak transcription	Brain Germinal Matrix	brain
28	chr9:103029000-103053600	Weak transcription	Hela-S3	cervix
29	chr9:103029200-103046600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr9:103029200-103047000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:103029200-103047600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:103029200-103054600	Weak transcription	Brain Angular Gyrus	brain
33	chr9:103029800-103046600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:103029800-103047400	Weak transcription	HepG2	liver
35	chr9:103031200-103046400	Weak transcription	Small Intestine	intestine
36	chr9:103034200-103047200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr9:103034800-103047400	Strong transcription	Primary T cells from cord blood	blood
38	chr9:103035000-103047200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:103035600-103046200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr9:103035600-103046600	Weak transcription	Lung	lung
41	chr9:103035600-103046600	Weak transcription	Spleen	Spleen
42	chr9:103035800-103046600	Weak transcription	Esophagus	oesophagus
43	chr9:103035800-103046600	Weak transcription	Fetal Brain Female	brain
44	chr9:103035800-103046600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:103035800-103046600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr9:103035800-103046600	Weak transcription	Right Ventricle	heart
47	chr9:103035800-103046800	Weak transcription	Colon Smooth Muscle	Colon
48	chr9:103037000-103046600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:103039000-103047400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr9:103039400-103046200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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