Variant report

Variant	rs1539297
Chromosome Location	chr9:102871586-102871587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102867138..102869775-chr9:102870214..102872272,2	MCF-7	breast:
2	chr17:59475381..59477678-chr9:102869621..102872355,2	MCF-7	breast:
3	chr9:102860838..102863359-chr9:102869979..102874274,3	MCF-7	breast:
4	chr9:102865407..102867513-chr9:102869712..102872689,2	K562	blood:

Variant related genes	Relation type
ENSG00000121068	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000119509	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000023318	Chromatin interaction

Extended variants
information (count: 214 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs10116798	0.87[ASN][1000 genomes]
rs10117150	0.87[ASN][1000 genomes]
rs10117828	0.84[YRI][hapmap]
rs10120103	0.82[YRI][hapmap]
rs10121601	0.83[YRI][hapmap]
rs10121880	0.82[YRI][hapmap]
rs10123261	0.82[YRI][hapmap]
rs1014651	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1014652	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10156395	0.84[ASN][1000 genomes]
rs10217337	0.83[YRI][hapmap]
rs10217692	0.82[YRI][hapmap]
rs10512268	0.82[YRI][hapmap]
rs10739795	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs10739796	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10760704	0.83[YRI][hapmap]
rs10760710	0.94[ASN][1000 genomes]
rs10760711	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10760712	0.94[ASN][1000 genomes]
rs10760720	0.87[ASN][1000 genomes]
rs10819714	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10819715	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10819716	0.94[ASN][1000 genomes]
rs10819717	0.94[ASN][1000 genomes]
rs10819719	0.93[ASN][1000 genomes]
rs10819737	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10819739	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10988945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988963	0.94[ASN][1000 genomes]
rs10988968	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988969	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10989009	0.87[ASN][1000 genomes]
rs1099910	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11555502	0.80[ASN][1000 genomes]
rs12336751	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12552646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685650	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13301295	0.87[ASN][1000 genomes]
rs1338119	0.84[ASN][1000 genomes]
rs1338121	0.84[CEU][hapmap]
rs1338123	0.82[JPT][hapmap]
rs1338124	0.82[JPT][hapmap]
rs1338125	0.82[JPT][hapmap]
rs1342147	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1361668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406613	0.94[ASN][1000 genomes]
rs1415926	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1418267	0.94[ASN][1000 genomes]
rs1529191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529192	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1529193	0.94[ASN][1000 genomes]
rs1534726	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1535667	0.96[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1572607	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1578644	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1578645	0.94[ASN][1000 genomes]
rs1578646	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1830454	0.84[YRI][hapmap]
rs1852863	0.84[YRI][hapmap]
rs1852864	0.94[ASN][1000 genomes]
rs1852865	0.94[ASN][1000 genomes]
rs1891334	0.89[ASN][1000 genomes]
rs1997367	0.82[YRI][hapmap]
rs1997368	0.82[YRI][hapmap]
rs1999877	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2031035	0.81[YRI][hapmap]
rs2057476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2065997	0.84[CEU][hapmap]
rs2093696	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096158	0.94[ASN][1000 genomes]
rs2104273	0.94[ASN][1000 genomes]
rs2181579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2209082	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2245216	0.82[JPT][hapmap]
rs2416936	0.84[YRI][hapmap]
rs2416937	0.84[YRI][hapmap]
rs2416940	0.84[YRI][hapmap]
rs2476439	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2476441	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2476442	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2491095	0.84[ASN][1000 genomes]
rs2491096	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2698999	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2761053	0.94[ASN][1000 genomes]
rs2761056	0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs2787361	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2787363	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2787364	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2787365	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2787366	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2787374	0.84[CEU][hapmap]
rs2787375	0.82[JPT][hapmap]
rs2787379	0.85[CEU][hapmap]
rs2787380	0.82[JPT][hapmap]
rs2787382	0.85[CEU][hapmap]
rs2787384	0.85[CEU][hapmap]
rs2787391	1.00[JPT][hapmap]
rs2787393	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2787394	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2787395	0.82[JPT][hapmap]
rs2787396	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2787397	0.82[JPT][hapmap]
rs2791335	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2791336	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2791337	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2795575	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2806681	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2806682	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2806683	0.85[ASN][1000 genomes]
rs2806684	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2806685	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2806687	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2806688	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2806691	0.84[CEU][hapmap]
rs2806695	0.82[JPT][hapmap]
rs2806696	0.82[JPT][hapmap]
rs2806699	0.84[CEU][hapmap]
rs2806703	0.82[JPT][hapmap]
rs28448789	0.94[ASN][1000 genomes]
rs35493819	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3824510	0.84[ASN][1000 genomes]
rs41346545	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4282626	0.84[YRI][hapmap]
rs4452862	0.82[YRI][hapmap]
rs4495492	0.91[ASN][1000 genomes]
rs4503155	0.94[ASN][1000 genomes]
rs4517187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585797	0.84[YRI][hapmap]
rs4742777	0.82[YRI][hapmap]
rs4742778	0.82[YRI][hapmap]
rs4742779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743370	0.84[YRI][hapmap]
rs4743375	0.94[ASN][1000 genomes]
rs4743376	0.94[ASN][1000 genomes]
rs4743378	0.84[ASN][1000 genomes]
rs4743379	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743380	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743381	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743382	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743384	0.86[ASN][1000 genomes]
rs4743386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478991	0.94[ASN][1000 genomes]
rs6478994	0.94[ASN][1000 genomes]
rs6478995	0.94[ASN][1000 genomes]
rs6478996	0.94[ASN][1000 genomes]
rs6478997	0.94[ASN][1000 genomes]
rs6478998	0.94[ASN][1000 genomes]
rs6479000	0.94[ASN][1000 genomes]
rs6479001	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs6479002	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs7018981	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022493	0.94[ASN][1000 genomes]
rs7024016	0.94[ASN][1000 genomes]
rs7025300	0.94[ASN][1000 genomes]
rs7026532	0.94[ASN][1000 genomes]
rs7027414	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs7027619	0.84[YRI][hapmap]
rs7029020	0.94[ASN][1000 genomes]
rs7029048	0.94[ASN][1000 genomes]
rs7032333	0.94[ASN][1000 genomes]
rs7033091	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs7036518	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7037362	0.94[ASN][1000 genomes]
rs7038506	0.81[YRI][hapmap]
rs7041338	0.94[ASN][1000 genomes]
rs7042194	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7042912	0.94[ASN][1000 genomes]
rs7043057	0.94[ASN][1000 genomes]
rs7044219	0.94[ASN][1000 genomes]
rs7045612	0.84[ASN][1000 genomes]
rs7047092	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7846794	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs7847213	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs7853485	0.93[ASN][1000 genomes]
rs7856844	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7857530	0.94[ASN][1000 genomes]
rs7858606	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7859492	0.89[ASN][1000 genomes]
rs7861003	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs7862460	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7864494	0.82[JPT][hapmap]
rs7870585	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7874449	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs846752	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs846753	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs846754	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs846755	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846756	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs846758	0.94[ASN][1000 genomes]
rs846759	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs846761	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs846762	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846763	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs846766	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs846768	0.87[ASN][1000 genomes]
rs846769	0.87[ASN][1000 genomes]
rs846770	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs860171	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs863668	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9299335	0.84[YRI][hapmap]
rs9408993	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9408995	0.85[ASN][1000 genomes]
rs942163	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs946054	0.82[JPT][hapmap]
rs9556	0.87[YRI][hapmap]
rs9695692	0.87[ASN][1000 genomes]
rs9886877	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1539297	STX17	cis	Esophagus Mucosa	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102862200-102876800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:102862200-102876800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:102862200-102879800	Weak transcription	Esophagus	oesophagus
4	chr9:102862200-102881000	Weak transcription	Gastric	stomach
5	chr9:102862200-102902400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:102862400-102881400	Weak transcription	Colonic Mucosa	Colon
7	chr9:102862800-102872400	Weak transcription	Fetal Heart	heart
8	chr9:102862800-102873400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:102862800-102875400	Weak transcription	Small Intestine	intestine
10	chr9:102862800-102877600	Weak transcription	Stomach Mucosa	stomach
11	chr9:102862800-102881800	Weak transcription	Right Ventricle	heart
12	chr9:102862800-102887400	Weak transcription	Pancreas	Pancrea
13	chr9:102863400-102871800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:102863400-102874200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:102863600-102872000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:102863800-102871800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:102865800-102871800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr9:102866200-102872000	Strong transcription	HSMM	muscle
19	chr9:102866200-102874800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:102866400-102871800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:102866400-102871800	Strong transcription	Osteobl	bone
22	chr9:102866400-102872000	Strong transcription	Placenta	Placenta
23	chr9:102866400-102872000	Strong transcription	A549	lung
24	chr9:102866400-102872200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr9:102866400-102872200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr9:102866400-102872800	Strong transcription	HepG2	liver
27	chr9:102866400-102873800	Strong transcription	Primary B cells from cord blood	blood
28	chr9:102866400-102873800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr9:102866400-102874200	Strong transcription	Dnd41	blood
30	chr9:102866600-102872800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:102866600-102879000	Weak transcription	Fetal Intestine Small	intestine
32	chr9:102867000-102871600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:102867000-102872800	Weak transcription	Fetal Stomach	stomach
34	chr9:102867000-102873800	Weak transcription	Aorta	Aorta
35	chr9:102867000-102881000	Weak transcription	Spleen	Spleen
36	chr9:102867000-102899800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:102867200-102873200	Weak transcription	HMEC	breast
38	chr9:102867200-102874000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr9:102867800-102873400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr9:102868000-102872600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:102868600-102895600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:102869000-102874600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:102869000-102880200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr9:102869000-102881800	Weak transcription	Psoas Muscle	Psoas
45	chr9:102869000-102886600	Weak transcription	K562	blood
46	chr9:102869000-102888600	Weak transcription	Hela-S3	cervix
47	chr9:102869200-102871800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr9:102869200-102873600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:102869200-102873600	Weak transcription	Lung	lung
50	chr9:102869200-102873800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links