Variant report

Variant	rs10739795
Chromosome Location	chr9:102826067-102826068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102807697..102809617-chr9:102824304..102827110,2	K562	blood:
2	chr9:102821199..102823384-chr9:102825604..102827589,3	K562	blood:
3	chr9:102824602..102826220-chr9:102859510..102862176,2	K562	blood:

Variant related genes	Relation type
ENSG00000023318	Chromatin interaction
ENSG00000119509	Chromatin interaction

Extended variants
information (count: 181 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10116798	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10117150	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1014651	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1014652	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10156395	0.89[ASN][1000 genomes]
rs10739796	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs10760710	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760711	0.96[ASN][1000 genomes]
rs10760712	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760720	0.89[ASN][1000 genomes]
rs10819714	0.96[ASN][1000 genomes]
rs10819715	0.96[ASN][1000 genomes]
rs10819716	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819717	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819719	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10819737	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs10819739	0.89[ASN][1000 genomes]
rs10988945	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10988963	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988968	0.94[ASN][1000 genomes]
rs10988969	0.94[ASN][1000 genomes]
rs10988973	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs10988974	0.93[ASN][1000 genomes]
rs10989009	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1099910	0.83[ASN][1000 genomes]
rs11555502	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12336751	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12552646	1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[ASN][1000 genomes]
rs12685650	0.96[ASN][1000 genomes]
rs13301295	0.89[ASN][1000 genomes]
rs1338119	0.85[ASN][1000 genomes]
rs1338121	0.83[CHD][hapmap]
rs1342147	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs1361668	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1406613	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415926	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1418267	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529191	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.96[ASN][1000 genomes]
rs1529192	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529193	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1535667	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1539297	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1572607	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1578644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578646	0.96[ASN][1000 genomes]
rs1852864	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852865	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891334	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1999877	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2057476	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2093696	0.96[ASN][1000 genomes]
rs2096158	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104273	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181579	1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs2209082	0.90[ASN][1000 genomes]
rs2245216	0.81[CEU][hapmap]
rs2416985	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2476439	0.89[ASN][1000 genomes]
rs2476441	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs2476442	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2485746	0.81[AMR][1000 genomes]
rs2491095	0.85[ASN][1000 genomes]
rs2491096	0.82[ASN][1000 genomes]
rs2698999	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs2761053	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2761056	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787361	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787363	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[ASN][1000 genomes]
rs2787364	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2787365	0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.85[ASN][1000 genomes]
rs2787366	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787390	0.83[CHD][hapmap]
rs2787391	0.82[JPT][hapmap];0.86[YRI][hapmap]
rs2787393	0.80[ASN][1000 genomes]
rs2787394	0.82[JPT][hapmap];0.86[YRI][hapmap]
rs2787395	0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.80[ASN][1000 genomes]
rs2787396	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2787397	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2791335	0.91[ASN][1000 genomes]
rs2791336	0.96[ASN][1000 genomes]
rs2791337	0.96[ASN][1000 genomes]
rs2795575	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[ASN][1000 genomes]
rs2806681	1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs2806682	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs2806683	0.83[ASN][1000 genomes]
rs2806684	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2806685	0.80[ASN][1000 genomes]
rs2806687	1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2806688	0.82[ASN][1000 genomes]
rs2806691	0.84[CHD][hapmap]
rs28448789	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493819	0.84[ASN][1000 genomes]
rs3824510	0.89[ASN][1000 genomes]
rs41346545	0.96[ASN][1000 genomes]
rs4428721	0.81[ASW][hapmap]
rs4495492	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4503155	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4517187	1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.94[ASN][1000 genomes]
rs4742779	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4743375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743378	0.89[ASN][1000 genomes]
rs4743379	0.93[ASN][1000 genomes]
rs4743380	0.93[ASN][1000 genomes]
rs4743381	0.89[ASN][1000 genomes]
rs4743382	0.96[ASN][1000 genomes]
rs4743384	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743386	0.93[ASN][1000 genomes]
rs6478991	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478992	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6478993	0.82[AMR][1000 genomes]
rs6478994	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478995	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478996	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478997	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478998	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479002	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7018981	0.94[ASN][1000 genomes]
rs7022493	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025300	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027414	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029020	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029048	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033091	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036518	0.93[ASN][1000 genomes]
rs7037362	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042194	0.96[ASN][1000 genomes]
rs7042912	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044219	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045612	0.89[ASN][1000 genomes]
rs7047092	0.95[ASN][1000 genomes]
rs7846794	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7847213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7853485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856844	0.89[ASN][1000 genomes]
rs7857530	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858606	0.96[ASN][1000 genomes]
rs7859492	0.87[ASN][1000 genomes]
rs7861003	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7862460	0.96[ASN][1000 genomes]
rs7865257	0.81[ASW][hapmap]
rs7870585	0.95[ASN][1000 genomes]
rs7873746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs7874449	0.93[ASN][1000 genomes]
rs846752	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs846753	0.91[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs846754	0.93[ASN][1000 genomes]
rs846755	0.94[ASN][1000 genomes]
rs846756	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs846758	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs846759	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs846761	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs846762	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs846763	0.83[ASN][1000 genomes]
rs846765	0.81[AMR][1000 genomes]
rs846766	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs846768	0.89[ASN][1000 genomes]
rs846769	0.89[ASN][1000 genomes]
rs846770	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs860171	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs863668	0.89[ASN][1000 genomes]
rs9299337	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9408995	0.84[ASN][1000 genomes]
rs9409325	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs942163	0.96[ASN][1000 genomes]
rs9695692	0.89[ASN][1000 genomes]
rs9886877	1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.83[MEX][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10739795	TBC1D22B	cis	Cerebellum	GTEx
rs10739795	MURC	cis	parietal	SCAN
rs10739795	STX17	cis	Skin Sun Exposed Lower leg	GTEx
rs10739795	INVS	cis	cerebellum	SCAN
rs10739795	STX17	cis	Esophagus Mucosa	GTEx

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102729600-102826800	Weak transcription	HMEC	breast
2	chr9:102767600-102826400	Weak transcription	Small Intestine	intestine
3	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
5	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:102796400-102828800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:102797400-102827800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:102800000-102828800	Weak transcription	Aorta	Aorta
9	chr9:102800000-102828800	Weak transcription	Gastric	stomach
10	chr9:102800000-102828800	Weak transcription	Pancreas	Pancrea
11	chr9:102800000-102828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
13	chr9:102800200-102828800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:102800200-102836400	Weak transcription	Fetal Stomach	stomach
15	chr9:102802400-102829000	Weak transcription	Psoas Muscle	Psoas
16	chr9:102805400-102844800	Weak transcription	Thymus	Thymus
17	chr9:102807400-102844800	Weak transcription	Fetal Brain Male	brain
18	chr9:102809600-102828600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr9:102809600-102828600	Weak transcription	Brain Substantia Nigra	brain
20	chr9:102809800-102845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:102810000-102839200	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:102810800-102845400	Weak transcription	Fetal Brain Female	brain
23	chr9:102812600-102826800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:102813800-102828400	Weak transcription	Brain Angular Gyrus	brain
25	chr9:102814000-102826800	Weak transcription	NHEK	skin
26	chr9:102814000-102828400	Weak transcription	Brain Anterior Caudate	brain
27	chr9:102814000-102829000	Weak transcription	Left Ventricle	heart
28	chr9:102814200-102829200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:102814200-102842400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:102814200-102842600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr9:102814600-102828600	Weak transcription	Adipose Nuclei	Adipose
32	chr9:102814600-102834200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:102818000-102842000	Weak transcription	Spleen	Spleen
34	chr9:102818400-102828800	Weak transcription	Right Ventricle	heart
35	chr9:102819400-102827600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:102819600-102826800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:102819800-102828200	Weak transcription	K562	blood
38	chr9:102819800-102829000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:102820200-102842800	Weak transcription	HepG2	liver
40	chr9:102820600-102826800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr9:102820600-102827000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:102820800-102837400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:102820800-102846000	Weak transcription	Primary T cells from cord blood	blood
44	chr9:102821000-102845600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr9:102821600-102826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:102821800-102827600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:102821800-102837000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr9:102822000-102826800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:102822000-102827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:102822000-102827400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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