Variant report

Variant	rs2416935
Chromosome Location	chr9:102669557-102669558
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr9:102668879-102669636	H1-hESC	embryonic stem cell:	n/a	n/a
2	ZNF263	chr9:102668991-102669593	HEK293-T-REx	kidney:	n/a	n/a
3	MAX	chr9:102668560-102669687	HepG2	liver:	n/a	n/a
4	POLR2A	chr9:102668911-102669636	GM12891	blood:	n/a	n/a
5	HA-E2F1	chr9:102668966-102669845	MCF-7	breast:	n/a	n/a
6	POLR2A	chr9:102668670-102669651	GM12892	blood:	n/a	n/a
7	POLR2A	chr9:102668518-102669647	MCF-7	breast:	n/a	n/a
8	ELK1	chr9:102669044-102669581	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr9:102668634-102669821	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr9:102668891-102669665	GM12891	blood:	n/a	n/a
11	RCOR1	chr9:102668492-102669733	K562	blood:	n/a	n/a
12	POLR2A	chr9:102668643-102669644	HEK293	kidney:	n/a	n/a
13	RUNX3	chr9:102668934-102669660	GM12878	blood:	n/a	n/a
14	POLR2A	chr9:102668660-102669624	Hela-S3	cervix:	n/a	n/a
15	BCLAF1	chr9:102668939-102669619	GM12878	blood:	n/a	n/a
16	ELF1	chr9:102668895-102669698	GM12878	blood:	n/a	chr9:102669452-102669465
17	HEY1	chr9:102668873-102669561	K562	blood:	n/a	n/a
18	ELF1	chr9:102669264-102669571	HepG2	liver:	n/a	chr9:102669452-102669465
19	ZEB1	chr9:102668523-102669653	HepG2	liver:	n/a	chr9:102668829-102668841 chr9:102669375-102669386 chr9:102668830-102668841 chr9:102668831-102668838
20	POLR2A	chr9:102668624-102669653	HepG2	liver:	n/a	n/a
21	POLR2A	chr9:102668898-102669766	HepG2	liver:	n/a	n/a
22	ELF1	chr9:102668886-102669735	MCF-7	breast:	n/a	chr9:102669452-102669465
23	POLR2A	chr9:102668759-102669647	K562	blood:	n/a	n/a
24	POLR2A	chr9:102668710-102669619	HepG2	liver:	n/a	n/a
25	POLR2A	chr9:102668836-102669588	GM12878	blood:	n/a	n/a
26	POLR2A	chr9:102668878-102669611	HCT-116	colon:	n/a	n/a
27	ETS1	chr9:102669152-102669597	GM12878	blood:	n/a	chr9:102669453-102669468
28	POLR2A	chr9:102668768-102669695	HL-60	blood:	n/a	n/a
29	POLR2A	chr9:102668889-102669880	GM12878	blood:	n/a	n/a
30	ELF1	chr9:102669248-102669578	HepG2	liver:	n/a	chr9:102669452-102669465
31	GTF2F1	chr9:102669117-102669730	Hela-S3	cervix:	n/a	n/a
32	MAX	chr9:102668946-102669717	Hela-S3	cervix:	n/a	n/a
33	MAX	chr9:102668882-102669578	K562	blood:	n/a	n/a
34	CTCF	chr9:102668573-102669630	K562	blood:	n/a	n/a
35	POLR2A	chr9:102668686-102669626	GM19193	blood:	n/a	n/a
36	RFX5	chr9:102669030-102669573	HepG2	liver:	n/a	n/a
37	POLR2A	chr9:102668678-102669661	GM15510	blood:	n/a	n/a
38	POLR2A	chr9:102668441-102669783	SK-N-MC	brain:	n/a	n/a
39	TCF12	chr9:102668699-102669599	ECC-1	luminal epithelium:	n/a	chr9:102669377-102669384
40	NRF1	chr9:102668490-102669715	SK-N-SH	brain:	n/a	chr9:102668938-102668952 chr9:102668941-102668955 chr9:102668941-102668952 chr9:102668941-102668952
41	POLR2A	chr9:102668797-102669628	GM10847	blood:	n/a	n/a
42	STAT5A	chr9:102669216-102669654	GM12878	blood:	n/a	n/a
43	TAF1	chr9:102668879-102669605	GM12878	blood:	n/a	n/a
44	POLR2A	chr9:102668649-102670376	MCF10A-Er-Src	breast:	n/a	n/a
45	SIN3AK20	chr9:102667952-102669746	MCF-7	breast:	n/a	n/a
46	TAF1	chr9:102668647-102669578	ECC-1	luminal epithelium:	n/a	n/a
47	E2F6	chr9:102668889-102669615	H1-hESC	embryonic stem cell:	n/a	chr9:102668942-102668951
48	HDAC2	chr9:102668583-102669643	MCF-7	breast:	n/a	n/a
49	SMC3	chr9:102669127-102669578	GM12878	blood:	n/a	n/a
50	POLR2A	chr9:102668855-102669581	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:102580555..102587852-chr9:102667958..102670918,11	MCF-7	breast:
2	chr9:102580574..102584384-chr9:102666062..102670667,9	K562	blood:
3	chr9:102580667..102584355-chr9:102667685..102671328,3	K562	blood:
4	chr19:56631872..56632543-chr9:102669033..102669852,2	Hela-S3	cervix:
5	chr9:102668724..102670876-chr9:102691785..102694126,2	MCF-7	breast:
6	chr9:102668815..102670753-chr9:102697540..102700821,3	K562	blood:
7	chr9:102668815..102670753-chr9:102698922..102700821,2	K562	blood:
8	chr3:39424870..39425746-chr9:102668917..102669582,2	Hela-S3	cervix:
9	chr9:102667836..102670748-chr9:102860445..102862735,2	K562	blood:
10	chr9:102580482..102589062-chr9:102666380..102672134,16	MCF-7	breast:
11	chr10:33293935..33294887-chr9:102668937..102669750,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000255145	TF binding region
ENSG00000144659	Chromatin interaction
ENSG00000150093	Chromatin interaction
ENSG00000237461	Chromatin interaction
ENSG00000119509	Chromatin interaction
ENSG00000023318	Chromatin interaction
ENSG00000254571	Chromatin interaction
ENSG00000119508	Chromatin interaction
ENSG00000136874	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10116142	0.80[CEU][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10117638	0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10117828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118565	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10120103	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10121880	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122128	0.93[ASN][1000 genomes]
rs10123261	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124366	0.81[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10125981	0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10217337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217366	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217692	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739791	0.93[ASN][1000 genomes]
rs10739792	0.94[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs10739793	0.93[ASN][1000 genomes]
rs10739794	0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs10760698	0.92[ASN][1000 genomes]
rs10760699	0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10760700	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760705	0.92[ASN][1000 genomes]
rs10760706	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819705	0.92[ASN][1000 genomes]
rs10819706	0.93[ASN][1000 genomes]
rs10819707	0.93[ASN][1000 genomes]
rs10819711	0.93[ASN][1000 genomes]
rs10819712	0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10988919	0.93[ASN][1000 genomes]
rs10988920	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988945	0.83[YRI][hapmap]
rs12352899	0.93[ASN][1000 genomes]
rs1342147	0.87[YRI][hapmap]
rs1361668	0.87[YRI][hapmap]
rs1529191	0.82[YRI][hapmap]
rs16918878	0.88[JPT][hapmap]
rs1830454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881751	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1962051	0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs1969577	0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs1997367	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997368	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031035	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181579	0.82[YRI][hapmap]
rs2416936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2416937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416938	0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs2416940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416941	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416942	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2698999	0.83[YRI][hapmap]
rs2795575	0.83[YRI][hapmap]
rs2900224	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3739794	0.93[ASN][1000 genomes]
rs3983846	0.92[ASN][1000 genomes]
rs4282626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452862	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4517187	0.87[YRI][hapmap]
rs4585797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742777	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742778	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742779	0.82[YRI][hapmap]
rs4743370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478987	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478988	0.92[ASN][1000 genomes]
rs6478990	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022208	0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs7022999	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7030388	0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs7038506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853264	0.93[ASN][1000 genomes]
rs9299335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556	1.00[ASW][hapmap];0.96[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	esv3366813	chr9:102657446-102670065	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2416935	C9orf30	cis	cerebellum	SCAN
rs2416935	STX17	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102668000-102669600	Active TSS	Brain Angular Gyrus	brain
2	chr9:102668000-102669800	Active TSS	Placenta Amnion	Placenta Amnion
3	chr9:102668200-102669600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:102668200-102669600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr9:102668200-102669600	Active TSS	Rectal Mucosa Donor 31	rectum
6	chr9:102668200-102669800	Active TSS	Muscle Satellite Cultured Cells	--
7	chr9:102668200-102669800	Active TSS	Colon Smooth Muscle	Colon
8	chr9:102668200-102669800	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr9:102668200-102670000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:102668200-102670000	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr9:102668200-102670000	Active TSS	Fetal Intestine Small	intestine
12	chr9:102668200-102670000	Active TSS	Fetal Kidney	kidney
13	chr9:102668200-102670000	Active TSS	HSMMtube	muscle
14	chr9:102668200-102670200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:102668200-102670200	Active TSS	NHDF-Ad	bronchial
16	chr9:102668200-102670400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr9:102668400-102669600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr9:102668400-102669800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr9:102668400-102669800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:102668400-102669800	Active TSS	Esophagus	oesophagus
21	chr9:102668400-102669800	Active TSS	Fetal Brain Female	brain
22	chr9:102668400-102669800	Active TSS	Fetal Heart	heart
23	chr9:102668400-102669800	Active TSS	Left Ventricle	heart
24	chr9:102668400-102669800	Active TSS	Lung	lung
25	chr9:102668400-102669800	Active TSS	Pancreas	Pancrea
26	chr9:102668400-102669800	Active TSS	HSMM	muscle
27	chr9:102668400-102670000	Active TSS	H9 Cell Line	embryonic stem cell
28	chr9:102668400-102670000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:102668400-102670000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:102668400-102670000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:102668400-102670000	Active TSS	Fetal Brain Male	brain
32	chr9:102668400-102670000	Active TSS	Fetal Muscle Trunk	muscle
33	chr9:102668400-102670000	Active TSS	Right Atrium	heart
34	chr9:102668400-102670000	Active TSS	Right Ventricle	heart
35	chr9:102668400-102670000	Active TSS	NH-A	brain
36	chr9:102668400-102670200	Active TSS	NHLF	lung
37	chr9:102668400-102670400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:102668400-102670400	Active TSS	Fetal Intestine Large	intestine
39	chr9:102668600-102669600	Active TSS	Primary T cells from cord blood	blood
40	chr9:102668600-102669600	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr9:102668600-102669600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr9:102668600-102669600	Active TSS	Rectal Smooth Muscle	rectum
43	chr9:102668600-102669600	Active TSS	Spleen	Spleen
44	chr9:102668600-102669800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr9:102668600-102669800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:102668600-102669800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:102668600-102669800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:102668600-102669800	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr9:102668600-102669800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:102668600-102669800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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