Variant report

Variant	rs7883098
Chromosome Location	chrX:56313661-56313662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:56308372..56311065-chrX:56311411..56313857,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLF8-2	chrX:56312985-56315265	NONHSAT137266

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2375630	1.00[YRI][hapmap]
rs3747284	1.00[YRI][hapmap]
rs5913918	1.00[YRI][hapmap]
rs6612506	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752678	chrX:55930768-56851953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2753382	chrX:55930768-56851953	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2754448	chrX:55930768-56851953	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2755974	chrX:55930768-56851953	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv432333	chrX:55930768-56851953	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2756104	chrX:56292362-56824154	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv534648	chrX:56306570-56395419	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:56259800-56316200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chrX:56269400-56320200	Weak transcription	Brain Germinal Matrix	brain
3	chrX:56275000-56316200	Weak transcription	Colon Smooth Muscle	Colon
4	chrX:56279400-56316800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chrX:56280400-56320000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chrX:56286000-56336600	Weak transcription	Left Ventricle	heart
7	chrX:56290200-56314400	Weak transcription	Fetal Intestine Small	intestine
8	chrX:56297400-56316800	Weak transcription	Primary B cells from peripheral blood	blood
9	chrX:56297600-56316000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chrX:56298600-56314800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chrX:56301800-56319000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chrX:56305200-56316800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chrX:56309200-56318000	Weak transcription	Primary B cells from cord blood	blood
14	chrX:56309400-56316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chrX:56309800-56314000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chrX:56311000-56316000	Weak transcription	Fetal Stomach	stomach
17	chrX:56311000-56319600	Weak transcription	Aorta	Aorta
18	chrX:56311200-56314800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chrX:56312000-56314400	Weak transcription	Ovary	ovary
20	chrX:56312000-56315400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chrX:56312000-56318400	Weak transcription	Stomach Smooth Muscle	stomach
22	chrX:56312000-56320200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chrX:56312200-56316400	Weak transcription	Adipose Nuclei	Adipose
24	chrX:56312400-56319000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chrX:56312800-56315000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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