Variant report

Variant	rs7897649
Chromosome Location	chr10:117700006-117700007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10490984	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197469	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11197470	1.00[ASN][1000 genomes]
rs11197471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243113	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244318	1.00[ASN][1000 genomes]
rs12259143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259200	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17093765	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17093794	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615876	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2615881	1.00[CHB][hapmap]
rs2620962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57235740	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59851778	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585375	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076697	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7077116	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083759	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086294	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7087717	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098728	1.00[ASN][1000 genomes]
rs7100539	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71472879	1.00[ASN][1000 genomes]
rs73365756	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73381663	1.00[ASN][1000 genomes]
rs7898613	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904803	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7905925	1.00[ASN][1000 genomes]
rs7915450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7917409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878709	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117693800-117708600	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:117696000-117701000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:117697200-117701000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:117697200-117704000	Weak transcription	A549	lung
5	chr10:117697400-117700400	Weak transcription	Fetal Lung	lung
6	chr10:117697400-117700800	Weak transcription	Adipose Nuclei	Adipose
7	chr10:117697400-117701800	Weak transcription	Fetal Kidney	kidney
8	chr10:117697600-117700600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:117697600-117700600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:117697600-117701800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:117697600-117704800	Weak transcription	HSMM	muscle
12	chr10:117697600-117705200	Weak transcription	NH-A	brain
13	chr10:117697800-117700400	Weak transcription	NHLF	lung
14	chr10:117697800-117700600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:117697800-117700600	Weak transcription	NHDF-Ad	bronchial
16	chr10:117697800-117700800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:117697800-117700800	Weak transcription	Osteobl	bone
18	chr10:117698400-117700800	Enhancers	HUVEC	blood vessel
19	chr10:117699000-117700600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:117699200-117700200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:117699600-117701000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:117699800-117700800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:117699800-117700800	Weak transcription	NHEK	skin
24	chr10:117699800-117701800	Enhancers	HSMMtube	muscle

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