Variant report

Variant	rs878709
Chromosome Location	chr10:117598178-117598179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117594490..117597008-chr10:117598130..117599818,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10490984	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs11197469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11197470	0.83[ASN][1000 genomes]
rs11197471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11197472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11814712	1.00[TSI][hapmap]
rs12243113	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12244318	0.83[ASN][1000 genomes]
rs12259143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12259200	0.83[ASN][1000 genomes]
rs12264449	1.00[EUR][1000 genomes]
rs17093626	1.00[TSI][hapmap]
rs17093640	1.00[TSI][hapmap]
rs17093701	1.00[TSI][hapmap]
rs17093765	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17093794	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17095693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17095696	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2253684	1.00[TSI][hapmap]
rs2615876	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2615881	1.00[CHB][hapmap]
rs2615883	1.00[TSI][hapmap]
rs2620962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2907560	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs2907591	1.00[EUR][1000 genomes]
rs2927372	1.00[TSI][hapmap]
rs4336952	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs57235740	0.83[ASN][1000 genomes]
rs59851778	0.83[ASN][1000 genomes]
rs6585375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7070558	0.83[ASN][1000 genomes]
rs7076697	1.00[JPT][hapmap]
rs7077116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7083759	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7086294	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7087717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7098728	0.83[ASN][1000 genomes]
rs7100539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs71472879	0.83[ASN][1000 genomes]
rs73365756	0.83[ASN][1000 genomes]
rs73377573	1.00[EUR][1000 genomes]
rs73381663	0.83[ASN][1000 genomes]
rs7897649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7898613	0.83[ASN][1000 genomes]
rs7899322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7902099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7904803	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7905925	0.83[ASN][1000 genomes]
rs7915450	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7917409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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