Variant report

Variant	rs7904395
Chromosome Location	chr10:22164160-22164161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10740997	0.86[ASN][1000 genomes]
rs1086896	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1086897	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1086899	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11816415	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2066270	0.89[EUR][1000 genomes]
rs2066271	0.89[EUR][1000 genomes]
rs2252343	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2457954	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2487512	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2666750	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2666753	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2666756	0.80[ASN][1000 genomes]
rs2666759	0.86[ASN][1000 genomes]
rs2666760	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2666761	0.86[ASN][1000 genomes]
rs2666762	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2666763	0.81[AMR][1000 genomes]
rs2666768	0.80[EUR][1000 genomes]
rs2666769	0.87[EUR][1000 genomes]
rs2666771	0.89[EUR][1000 genomes]
rs2666772	0.80[EUR][1000 genomes]
rs2666779	0.89[EUR][1000 genomes]
rs2666781	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2666782	0.82[EUR][1000 genomes]
rs2793341	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2793351	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2793352	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2807978	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2807979	0.82[EUR][1000 genomes]
rs2807980	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2807982	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2807983	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2807984	0.82[EUR][1000 genomes]
rs2807987	0.81[EUR][1000 genomes]
rs2807988	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6650129	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6650130	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7089656	0.80[EUR][1000 genomes]
rs792452	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs792453	0.94[EUR][1000 genomes]
rs792454	0.84[EUR][1000 genomes]
rs792455	0.85[EUR][1000 genomes]
rs792456	0.81[EUR][1000 genomes]
rs792457	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs792458	0.86[EUR][1000 genomes]
rs806772	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7904395	MLLT10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22124200-22169800	Weak transcription	Right Ventricle	heart
2	chr10:22140800-22169800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22140800-22174800	Weak transcription	HSMM	muscle
4	chr10:22149600-22180200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:22153000-22169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:22153000-22200600	Weak transcription	Osteobl	bone
7	chr10:22155400-22169800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:22156800-22168000	Weak transcription	Adipose Nuclei	Adipose
9	chr10:22156800-22172000	Weak transcription	Fetal Brain Male	brain
10	chr10:22158000-22169800	Weak transcription	Primary T cells from cord blood	blood
11	chr10:22159400-22164200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:22159400-22164600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr10:22160200-22169800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:22160400-22178600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:22160400-22195600	Weak transcription	NHEK	skin
16	chr10:22160600-22170000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:22160600-22173600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:22161400-22207600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:22161600-22169800	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:22162000-22164600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:22162000-22164800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:22162200-22173600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:22162200-22178000	Weak transcription	Pancreas	Pancrea
24	chr10:22162200-22201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:22162400-22165000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:22162400-22170600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr10:22162400-22174400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:22162400-22177600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:22162600-22164600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:22162600-22170000	Weak transcription	A549	lung
31	chr10:22162600-22173200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:22162600-22173600	Weak transcription	Psoas Muscle	Psoas
33	chr10:22162800-22164200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:22162800-22164800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr10:22162800-22169600	Weak transcription	Primary B cells from cord blood	blood
36	chr10:22162800-22172600	Weak transcription	Brain Angular Gyrus	brain
37	chr10:22163000-22164200	ZNF genes & repeats	Aorta	Aorta
38	chr10:22163000-22164400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:22163000-22164400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:22163000-22164400	Strong transcription	Esophagus	oesophagus
41	chr10:22163000-22164400	Strong transcription	Ovary	ovary
42	chr10:22163000-22164600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:22163000-22169800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr10:22163000-22172200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr10:22163000-22172200	Weak transcription	Thymus	Thymus
46	chr10:22163000-22188000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:22163200-22164400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:22163200-22164400	Strong transcription	Spleen	Spleen
49	chr10:22163200-22165800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:22163200-22168800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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