Variant report

Variant	rs792455
Chromosome Location	chr10:22193422-22193423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10508639	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10740991	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs10764330	0.89[CEU][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10828264	1.00[CHB][hapmap]
rs10828266	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10828283	0.88[EUR][1000 genomes]
rs1086896	0.92[EUR][1000 genomes]
rs1086897	0.80[EUR][1000 genomes]
rs11012794	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs12571634	0.94[CEU][hapmap]
rs2066270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2066271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2252343	0.86[EUR][1000 genomes]
rs2457954	0.84[EUR][1000 genomes]
rs2487512	0.88[EUR][1000 genomes]
rs2666750	0.88[EUR][1000 genomes]
rs2666753	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2666754	0.90[CEU][hapmap]
rs2666756	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2666757	0.94[CEU][hapmap]
rs2666759	0.95[CEU][hapmap]
rs2666760	0.81[EUR][1000 genomes]
rs2666768	0.95[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2666769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2666771	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2666772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2666775	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2666776	0.95[CEU][hapmap]
rs2666779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2666781	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2666782	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs2793341	0.87[EUR][1000 genomes]
rs2793351	0.83[EUR][1000 genomes]
rs2793352	0.83[EUR][1000 genomes]
rs2807968	0.89[CEU][hapmap]
rs2807971	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807977	1.00[CHB][hapmap]
rs2807979	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807980	0.89[EUR][1000 genomes]
rs2807982	0.84[EUR][1000 genomes]
rs2807983	0.88[EUR][1000 genomes]
rs2807984	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807985	1.00[CEU][hapmap]
rs2807986	1.00[CEU][hapmap]
rs2807987	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs2807988	0.81[EUR][1000 genomes]
rs2859622	0.85[CEU][hapmap]
rs2986336	1.00[CHB][hapmap]
rs2998360	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3951780	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs4024198	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs4146689	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4364959	0.95[CEU][hapmap]
rs4748775	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748776	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4748777	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748778	0.85[EUR][1000 genomes]
rs4748779	0.95[CEU][hapmap]
rs7082663	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7089656	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7904395	0.85[EUR][1000 genomes]
rs7910002	0.81[CEU][hapmap]
rs792453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs792454	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs792456	0.89[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs792458	0.85[EUR][1000 genomes]
rs806774	0.90[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1048924	chr10:22177164-22296409	Enhancers Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs792455	MLLT10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22153000-22200600	Weak transcription	Osteobl	bone
2	chr10:22160400-22195600	Weak transcription	NHEK	skin
3	chr10:22161400-22207600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:22162200-22201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:22167200-22196600	Weak transcription	Small Intestine	intestine
6	chr10:22170600-22200200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:22171200-22197000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:22178400-22200200	Weak transcription	Thymus	Thymus
9	chr10:22179000-22201600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:22179000-22224000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:22179400-22194400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:22179600-22196000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:22180000-22200600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:22181200-22196400	Weak transcription	Fetal Heart	heart
15	chr10:22182000-22200800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:22182400-22198000	Weak transcription	A549	lung
17	chr10:22183200-22201600	Weak transcription	Brain Angular Gyrus	brain
18	chr10:22183400-22197400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:22183400-22201400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:22183400-22221000	Weak transcription	Left Ventricle	heart
21	chr10:22183800-22199000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:22183800-22200800	Weak transcription	Primary T cells from cord blood	blood
23	chr10:22183800-22207800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:22183800-22215600	Weak transcription	HSMM	muscle
25	chr10:22184200-22201800	Weak transcription	Brain Anterior Caudate	brain
26	chr10:22185000-22203200	Weak transcription	Spleen	Spleen
27	chr10:22185000-22222000	Weak transcription	Right Ventricle	heart
28	chr10:22185200-22210200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:22186000-22201400	Weak transcription	GM12878-XiMat	blood
30	chr10:22186600-22204400	Weak transcription	Esophagus	oesophagus
31	chr10:22188200-22196600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:22188400-22198600	Weak transcription	Lung	lung
33	chr10:22188600-22199800	Weak transcription	Fetal Intestine Large	intestine
34	chr10:22188600-22214800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:22188800-22198600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:22188800-22199200	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:22188800-22199200	Weak transcription	Gastric	stomach
38	chr10:22188800-22199200	Weak transcription	Pancreas	Pancrea
39	chr10:22188800-22210000	Weak transcription	Ovary	ovary
40	chr10:22188800-22213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:22188800-22229200	Weak transcription	Aorta	Aorta
42	chr10:22189000-22194400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:22189000-22200200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:22189000-22209000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr10:22189000-22210600	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr10:22189200-22196600	Weak transcription	Fetal Intestine Small	intestine
47	chr10:22189200-22200400	Weak transcription	Fetal Stomach	stomach
48	chr10:22191000-22215600	Weak transcription	NHDF-Ad	bronchial
49	chr10:22191200-22196000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:22191400-22196200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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