Variant report

Variant	rs7910002
Chromosome Location	chr10:22050570-22050571
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10508639	0.86[CEU][hapmap]
rs10740991	0.81[CEU][hapmap]
rs10828249	0.82[ASN][1000 genomes]
rs10828266	0.80[CEU][hapmap]
rs1086899	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11816415	0.94[ASN][1000 genomes]
rs1802669	0.82[ASN][1000 genomes]
rs2066270	0.80[CEU][hapmap]
rs2066271	0.80[CEU][hapmap]
rs2457954	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs2487512	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2666750	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2666753	0.90[CEU][hapmap]
rs2666756	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs2666768	0.86[CEU][hapmap]
rs2666769	0.81[CEU][hapmap]
rs2666771	0.85[CEU][hapmap]
rs2666772	0.80[CEU][hapmap]
rs2666775	0.85[CEU][hapmap]
rs2666779	0.80[CEU][hapmap]
rs2666781	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2666782	0.86[CEU][hapmap]
rs2807978	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2807979	0.85[CEU][hapmap]
rs2807982	0.91[CEU][hapmap]
rs2807983	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2807984	0.85[CEU][hapmap]
rs2807985	0.80[CEU][hapmap]
rs2807986	0.81[CEU][hapmap]
rs2807987	0.85[CEU][hapmap]
rs2807988	0.95[CEU][hapmap]
rs2998360	0.80[CEU][hapmap]
rs4024198	0.85[CEU][hapmap]
rs4748768	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482189	1.00[CHB][hapmap]
rs6482191	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7072776	1.00[CHB][hapmap]
rs7082663	0.80[CEU][hapmap]
rs792453	0.80[CEU][hapmap]
rs792455	0.81[CEU][hapmap]
rs806774	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv540513	chr10:22031022-22065456	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7910002	MLLT10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22028200-22056600	Weak transcription	Hela-S3	cervix
2	chr10:22029400-22053000	Weak transcription	Colonic Mucosa	Colon
3	chr10:22034000-22052600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:22034400-22051000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:22034400-22054200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:22034400-22057600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:22034400-22074000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:22036000-22053000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr10:22036000-22053200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:22036200-22052600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:22036200-22052800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:22036200-22066600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:22036600-22052800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:22041200-22055400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:22043800-22053800	Weak transcription	Fetal Thymus	thymus
16	chr10:22047200-22074000	Weak transcription	K562	blood
17	chr10:22047600-22054600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:22047600-22055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:22048000-22050800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:22048000-22053400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:22048000-22061600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:22048000-22109000	Weak transcription	Ovary	ovary
23	chr10:22048200-22052600	Weak transcription	Primary T cells from cord blood	blood
24	chr10:22048200-22052800	Weak transcription	Fetal Lung	lung
25	chr10:22048200-22069200	Weak transcription	Right Ventricle	heart
26	chr10:22048200-22074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:22048400-22050600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:22048400-22051400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:22048400-22070400	Weak transcription	Pancreas	Pancrea
30	chr10:22048400-22087400	Weak transcription	Aorta	Aorta
31	chr10:22048400-22094800	Weak transcription	Small Intestine	intestine
32	chr10:22048400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:22048600-22051800	Weak transcription	Colon Smooth Muscle	Colon
34	chr10:22048600-22054600	Weak transcription	Adipose Nuclei	Adipose
35	chr10:22048600-22056400	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:22048600-22056400	Weak transcription	Fetal Intestine Large	intestine
37	chr10:22048600-22058200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:22048600-22058600	Weak transcription	GM12878-XiMat	blood
39	chr10:22048600-22060400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:22048600-22061800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:22048600-22067600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:22048600-22067800	Weak transcription	Lung	lung
43	chr10:22048600-22074000	Weak transcription	Left Ventricle	heart
44	chr10:22048600-22074000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:22048600-22076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:22048600-22076600	Weak transcription	Gastric	stomach
47	chr10:22048800-22050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr10:22048800-22052600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:22048800-22055400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:22048800-22056200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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