Variant report

Variant	rs7082663
Chromosome Location	chr10:22088054-22088055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22082358..22085289-chr10:22087786..22091076,3	K562	blood:
2	chr10:22079504..22081110-chr10:22086680..22089399,2	K562	blood:
3	chr10:22086256..22088772-chr10:22096451..22099042,2	K562	blood:
4	chr10:22082723..22085289-chr10:22087786..22090780,2	K562	blood:
5	chr10:22085974..22088935-chr10:22094084..22096288,4	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10508639	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740991	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs10764328	0.84[MEX][hapmap];0.80[MKK][hapmap]
rs10764330	0.89[CEU][hapmap];0.85[GIH][hapmap]
rs10828264	1.00[CHB][hapmap]
rs10828266	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.90[MEX][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1086899	0.80[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs11012794	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[MEX][hapmap];0.80[MKK][hapmap];0.85[AMR][1000 genomes]
rs11816415	0.83[EUR][1000 genomes]
rs12356674	0.87[ASW][hapmap];0.88[MKK][hapmap]
rs1243194	1.00[CHB][hapmap]
rs1243195	1.00[CHB][hapmap]
rs12571634	0.89[ASW][hapmap];0.95[CEU][hapmap];0.82[GIH][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap]
rs1269454	1.00[CHB][hapmap]
rs2026092	1.00[CHB][hapmap]
rs2066270	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[MEX][hapmap]
rs2066271	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[MEX][hapmap]
rs2487512	0.80[CEU][hapmap]
rs2666750	0.80[CEU][hapmap]
rs2666754	1.00[ASW][hapmap];0.80[CEU][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.85[YRI][hapmap]
rs2666757	1.00[ASW][hapmap];0.84[CEU][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap]
rs2666759	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs2666768	0.95[CEU][hapmap]
rs2666769	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs2666771	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.81[MEX][hapmap]
rs2666772	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2666775	0.95[CEU][hapmap];0.88[GIH][hapmap]
rs2666776	1.00[ASW][hapmap];0.85[CEU][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap]
rs2666779	0.89[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[MEX][hapmap]
rs2666782	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs2807968	1.00[ASW][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap]
rs2807971	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap]
rs2807977	1.00[CHB][hapmap]
rs2807978	0.80[CEU][hapmap];0.87[TSI][hapmap]
rs2807979	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs2807983	0.80[CEU][hapmap]
rs2807984	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs2807985	0.89[ASW][hapmap];0.89[CEU][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap]
rs2807986	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs2807987	1.00[ASW][hapmap];0.95[CEU][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2859622	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs2998360	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap]
rs3951780	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.85[MEX][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap]
rs4024198	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4146689	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap]
rs4364959	1.00[ASW][hapmap];0.85[CEU][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap]
rs4748775	0.83[CEU][hapmap]
rs4748776	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap]
rs4748777	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs6482190	0.83[ASN][1000 genomes]
rs6650129	0.82[TSI][hapmap]
rs7089656	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap]
rs7910002	0.80[CEU][hapmap]
rs792453	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs792454	0.82[EUR][1000 genomes]
rs792455	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs806774	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv3389523	chr10:22074995-22097153	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7082663	MLLT10	Cis_1M	lymphoblastoid	RTeQTL
rs7082663	PSTPIP2	trans	lymphoblastoid	seeQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22048000-22109000	Weak transcription	Ovary	ovary
2	chr10:22048400-22094800	Weak transcription	Small Intestine	intestine
3	chr10:22048400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:22048800-22114000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:22055400-22095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:22062200-22088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:22066000-22113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:22074200-22105200	Weak transcription	Lung	lung
9	chr10:22074400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:22074800-22089800	Weak transcription	Fetal Intestine Small	intestine
11	chr10:22074800-22099000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:22074800-22100800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:22074800-22123200	Weak transcription	Left Ventricle	heart
14	chr10:22076800-22089800	Weak transcription	Fetal Stomach	stomach
15	chr10:22077800-22096200	Weak transcription	Gastric	stomach
16	chr10:22078000-22096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:22081800-22089200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:22084600-22090600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:22085000-22091000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:22085200-22089200	Enhancers	Primary T cells from cord blood	blood
21	chr10:22085600-22089400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:22085600-22102800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:22085800-22088400	Strong transcription	Liver	Liver
24	chr10:22085800-22090600	Weak transcription	Brain Anterior Caudate	brain
25	chr10:22086000-22089600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:22086200-22099200	Weak transcription	HSMM	muscle
27	chr10:22086600-22088600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:22086600-22088600	Genic enhancers	K562	blood
29	chr10:22086800-22088200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr10:22086800-22091200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:22086800-22093000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:22086800-22102000	Weak transcription	Pancreas	Pancrea
33	chr10:22087000-22102000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:22087200-22091400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:22087200-22091600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:22087200-22091800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:22087400-22090600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:22087400-22091400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:22087400-22094000	Weak transcription	Adipose Nuclei	Adipose
40	chr10:22087400-22094400	Weak transcription	Fetal Lung	lung
41	chr10:22087400-22096000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:22087400-22102800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr10:22087400-22103000	Weak transcription	Primary B cells from cord blood	blood
44	chr10:22087600-22088200	Weak transcription	GM12878-XiMat	blood
45	chr10:22087600-22088800	Weak transcription	Spleen	Spleen
46	chr10:22087600-22089000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr10:22087600-22090600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:22087600-22092000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:22087600-22092600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:22087600-22096200	Weak transcription	Aorta	Aorta

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