Variant report

Variant	rs2666768
Chromosome Location	chr10:22201558-22201559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10508639	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10740991	0.95[CEU][hapmap]
rs10764330	0.95[CEU][hapmap]
rs10828266	0.95[CEU][hapmap]
rs10828283	0.81[EUR][1000 genomes]
rs1086899	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11012794	0.89[CEU][hapmap]
rs12571634	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2066270	0.95[CEU][hapmap]
rs2066271	0.95[CEU][hapmap]
rs2457954	0.83[CEU][hapmap]
rs2487512	0.85[CEU][hapmap]
rs2666750	0.85[CEU][hapmap]
rs2666754	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2666755	1.00[CHB][hapmap]
rs2666757	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2666759	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2666760	0.81[CEU][hapmap]
rs2666761	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2666769	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2666771	1.00[CEU][hapmap]
rs2666772	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2666775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2666776	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2666779	0.95[CEU][hapmap]
rs2666782	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2807966	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2807967	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2807968	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2807971	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2807972	1.00[CHB][hapmap]
rs2807978	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs2807979	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807983	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2807984	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807985	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2807986	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2807987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2807988	0.82[CEU][hapmap]
rs2859622	0.90[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2941732	0.82[EUR][1000 genomes]
rs2941733	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2998360	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2998361	0.82[AMR][1000 genomes]
rs3951780	0.90[CEU][hapmap]
rs4024198	1.00[CEU][hapmap]
rs4146689	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4364959	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4748775	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs4748776	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748777	0.87[CEU][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4748779	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6650129	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs6650130	0.84[EUR][1000 genomes]
rs7082663	0.95[CEU][hapmap]
rs7089656	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7904395	0.80[EUR][1000 genomes]
rs7910002	0.86[CEU][hapmap]
rs792453	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs792454	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs792455	0.95[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs792456	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs806774	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1048924	chr10:22177164-22296409	Enhancers Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2666768	MLLT10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22161400-22207600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:22162200-22201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:22179000-22201600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:22179000-22224000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:22183200-22201600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:22183400-22221000	Weak transcription	Left Ventricle	heart
7	chr10:22183800-22207800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:22183800-22215600	Weak transcription	HSMM	muscle
9	chr10:22184200-22201800	Weak transcription	Brain Anterior Caudate	brain
10	chr10:22185000-22203200	Weak transcription	Spleen	Spleen
11	chr10:22185000-22222000	Weak transcription	Right Ventricle	heart
12	chr10:22185200-22210200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:22186600-22204400	Weak transcription	Esophagus	oesophagus
14	chr10:22188600-22214800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:22188800-22210000	Weak transcription	Ovary	ovary
16	chr10:22188800-22213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:22188800-22229200	Weak transcription	Aorta	Aorta
18	chr10:22189000-22209000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:22189000-22210600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr10:22191000-22215600	Weak transcription	NHDF-Ad	bronchial
21	chr10:22192800-22207600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:22193000-22203000	Weak transcription	Adipose Nuclei	Adipose
23	chr10:22193000-22210400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:22193000-22215000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:22193000-22215400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:22193000-22224200	Weak transcription	Primary B cells from cord blood	blood
27	chr10:22193200-22205600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr10:22193200-22207200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:22193200-22214800	Weak transcription	Placenta	Placenta
30	chr10:22193200-22216800	Weak transcription	Liver	Liver
31	chr10:22193400-22216000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:22193400-22216000	Weak transcription	K562	blood
33	chr10:22193600-22209000	Weak transcription	NH-A	brain
34	chr10:22193600-22210400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:22194600-22202800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:22196200-22223400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:22196800-22205800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:22196800-22216800	Weak transcription	Fetal Intestine Small	intestine
39	chr10:22198800-22202200	Weak transcription	Psoas Muscle	Psoas
40	chr10:22199000-22201600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:22199200-22216000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:22199400-22202200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:22199600-22204000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:22199600-22250800	Weak transcription	Pancreas	Pancrea
45	chr10:22200400-22202600	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr10:22200400-22203400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:22200600-22202200	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr10:22200600-22203000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:22200600-22203400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:22200600-22203400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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