Variant report

Variant	rs7906009
Chromosome Location	chr10:92056277-92056278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10881777	0.90[AMR][1000 genomes]
rs10881778	0.90[AMR][1000 genomes]
rs11186105	0.81[AMR][1000 genomes]
rs11186108	0.83[AMR][1000 genomes]
rs11186118	0.80[AMR][1000 genomes]
rs11186119	0.85[AMR][1000 genomes]
rs11186120	0.89[AMR][1000 genomes]
rs1409299	0.84[AMR][1000 genomes]
rs1570991	0.85[AMR][1000 genomes]
rs2182383	0.89[AMR][1000 genomes]
rs2419665	0.89[AMR][1000 genomes]
rs2900955	0.85[AMR][1000 genomes]
rs35384112	0.83[ASN][1000 genomes]
rs35440289	0.88[ASN][1000 genomes]
rs35499322	0.83[ASN][1000 genomes]
rs3981442	0.84[AMR][1000 genomes]
rs4253986	0.85[AMR][1000 genomes]
rs6583699	0.89[AMR][1000 genomes]
rs7901249	0.83[ASN][1000 genomes]
rs7901360	0.83[ASN][1000 genomes]
rs7901486	0.88[ASN][1000 genomes]
rs7905612	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7905702	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3375393	chr10:91880933-92243227	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92054600-92057600	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr10:92054600-92058200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr10:92054600-92058200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:92054600-92058800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr10:92054800-92057000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:92054800-92057600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:92054800-92057600	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr10:92055000-92056400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:92055000-92056600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:92055000-92057600	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:92055000-92058200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr10:92055000-92058200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:92055200-92056800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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