Variant report

Variant	rs7910902
Chromosome Location	chr10:18974707-18974708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1055116	0.94[ASN][1000 genomes]
rs10741111	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10741115	0.84[ASN][1000 genomes]
rs10741129	0.94[ASN][1000 genomes]
rs10741132	0.97[ASN][1000 genomes]
rs10764625	0.85[EUR][1000 genomes]
rs10764640	0.83[ASN][1000 genomes]
rs10764691	0.97[ASN][1000 genomes]
rs10828983	0.81[AMR][1000 genomes]
rs10829022	0.84[ASN][1000 genomes]
rs10829037	0.83[ASN][1000 genomes]
rs10829039	0.84[ASN][1000 genomes]
rs10829058	0.84[ASN][1000 genomes]
rs10829060	0.82[ASN][1000 genomes]
rs10829070	0.86[ASN][1000 genomes]
rs10829151	0.83[ASN][1000 genomes]
rs10829213	0.97[ASN][1000 genomes]
rs11015196	0.84[ASN][1000 genomes]
rs11015312	0.86[ASN][1000 genomes]
rs11015421	0.81[ASN][1000 genomes]
rs11540309	0.88[ASN][1000 genomes]
rs12219183	0.84[ASN][1000 genomes]
rs12359758	0.86[ASN][1000 genomes]
rs3740102	0.85[ASN][1000 genomes]
rs4748509	0.97[ASN][1000 genomes]
rs5022622	0.81[EUR][1000 genomes]
rs57066269	0.85[ASN][1000 genomes]
rs6482597	0.92[ASN][1000 genomes]
rs7081461	0.82[EUR][1000 genomes]
rs7081977	0.86[ASN][1000 genomes]
rs7087030	0.91[ASN][1000 genomes]
rs7099260	0.85[ASN][1000 genomes]
rs7100880	0.84[ASN][1000 genomes]
rs7477076	0.81[EUR][1000 genomes]
rs7896918	0.84[ASN][1000 genomes]
rs7898781	0.84[ASN][1000 genomes]
rs7899017	0.85[ASN][1000 genomes]
rs7909570	0.97[ASN][1000 genomes]
rs7909845	0.96[ASN][1000 genomes]
rs7922005	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7910902	RP11-499P20.2	cis	Nerve Tibial	GTEx
rs7910902	NSUN6	Cis_1M	lymphoblastoid	RTeQTL
rs7910902	RP11-499P20.2	cis	Thyroid	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18951000-18976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:18966200-18976000	Weak transcription	HepG2	liver
3	chr10:18968400-18978800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:18969800-18974800	Enhancers	Hela-S3	cervix
5	chr10:18971800-18975000	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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