Variant report

Variant	rs10741132
Chromosome Location	chr10:18972571-18972572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18962456..18966517-chr10:18966877..18973376,6	K562	blood:
2	chr10:18966816..18969348-chr10:18971030..18973085,3	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs1027193	0.82[ASN][1000 genomes]
rs1055116	0.96[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.84[LWK][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10734063	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10741091	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs10741111	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10741115	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10741127	0.88[CEU][hapmap];0.98[TSI][hapmap]
rs10741129	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764582	0.87[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs10764600	0.88[AMR][1000 genomes]
rs10764601	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes]
rs10764603	0.87[AMR][1000 genomes]
rs10764625	0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10764640	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10764691	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828851	0.88[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes]
rs10828870	0.88[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs10828871	0.86[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs10828872	0.87[AMR][1000 genomes]
rs10828896	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes]
rs10828911	0.88[AMR][1000 genomes]
rs10828965	0.88[AMR][1000 genomes]
rs10828975	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes]
rs10828991	0.81[ASN][1000 genomes]
rs10829009	0.81[ASN][1000 genomes]
rs10829022	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10829037	0.82[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10829039	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829040	0.84[AMR][1000 genomes]
rs10829058	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10829060	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10829070	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829148	0.87[EUR][1000 genomes]
rs10829151	0.96[CEU][hapmap];0.94[CHB][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10829213	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014892	0.87[AMR][1000 genomes]
rs11014981	0.90[JPT][hapmap]
rs11015048	0.88[AMR][1000 genomes]
rs11015196	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015255	0.88[AMR][1000 genomes]
rs11015312	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015421	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11511084	0.90[JPT][hapmap]
rs11525266	0.85[AMR][1000 genomes]
rs11540309	0.89[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11815228	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs12219183	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12359758	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12569474	0.86[AMR][1000 genomes]
rs12762481	0.90[JPT][hapmap]
rs12766105	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs12766314	0.90[JPT][hapmap]
rs12767923	0.90[JPT][hapmap]
rs12769425	0.90[JPT][hapmap]
rs12770851	0.85[JPT][hapmap]
rs12772522	0.89[JPT][hapmap]
rs12778035	0.90[JPT][hapmap]
rs12781208	0.90[JPT][hapmap]
rs12782882	0.82[ASN][1000 genomes]
rs12784986	0.90[JPT][hapmap]
rs12785031	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs2228645	0.85[JPT][hapmap]
rs2272274	0.87[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs3740102	0.96[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3740104	0.90[JPT][hapmap]
rs3817494	0.94[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs4237349	0.90[JPT][hapmap]
rs4310518	0.85[JPT][hapmap]
rs4445544	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs4468242	0.90[JPT][hapmap]
rs4747350	0.82[AMR][1000 genomes]
rs4748483	0.89[TSI][hapmap]
rs4748488	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes]
rs4748492	0.86[AMR][1000 genomes]
rs4748496	0.90[JPT][hapmap]
rs4748499	0.90[JPT][hapmap]
rs4748509	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5022622	0.94[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs57066269	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57579336	0.88[AMR][1000 genomes]
rs62636218	0.88[AMR][1000 genomes]
rs6482515	0.85[JPT][hapmap]
rs6482533	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes]
rs6482597	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7072624	0.90[JPT][hapmap]
rs7072963	0.90[JPT][hapmap]
rs7077722	0.86[AMR][1000 genomes]
rs7079325	0.88[AMR][1000 genomes]
rs7081461	0.89[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7081690	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7081977	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7087030	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7088091	0.88[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs7096923	0.90[JPT][hapmap]
rs7099260	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7099423	0.90[JPT][hapmap]
rs7100880	0.94[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72787963	0.87[AMR][1000 genomes]
rs7894016	0.88[AMR][1000 genomes]
rs7895784	0.94[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];0.83[YRI][hapmap]
rs7896918	0.88[ASN][1000 genomes]
rs7897159	0.81[JPT][hapmap]
rs7898513	0.81[JPT][hapmap]
rs7898781	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7899017	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7901598	0.88[AMR][1000 genomes]
rs7904016	0.89[JPT][hapmap]
rs7904263	0.87[AMR][1000 genomes]
rs7904949	0.89[JPT][hapmap]
rs7905365	0.89[JPT][hapmap]
rs7909570	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909845	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7910902	0.97[ASN][1000 genomes]
rs7917584	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs7922005	0.90[ASN][1000 genomes]
rs7922550	0.88[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs7922829	0.88[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs7923480	0.88[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs10741132	ARL5B	cis	lymphoblastoid	seeQTL
rs10741132	RP11-499P20.2	cis	Whole Blood	GTEx
rs10741132	RP11-499P20.2	cis	Skin Sun Exposed Lower leg	GTEx
rs10741132	ARL5B	cis	multi-tissue	Pritchard
rs10741132	NSUN6	cis	cerebellum	SCAN
rs10741132	NSUN6	cis	parietal	SCAN
rs10741132	RP11-499P20.2	cis	Thyroid	GTEx
rs10741132	TRDMT1	cis	parietal	SCAN
rs10741132	NSUN6	cis	lung	GTEx
rs10741132	RP11-499P20.2	cis	Esophagus Mucosa	GTEx
rs10741132	RP11-499P20.2	cis	Nerve Tibial	GTEx
rs10741132	RP11-499P20.2	cis	lung	GTEx

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18949400-18973200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:18951000-18976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:18951400-18973800	Weak transcription	Aorta	Aorta
4	chr10:18954400-18973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:18955000-18972600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:18956200-18973200	Weak transcription	Small Intestine	intestine
7	chr10:18959000-18973600	Weak transcription	Left Ventricle	heart
8	chr10:18960800-18973400	Weak transcription	Ovary	ovary
9	chr10:18961000-18973600	Weak transcription	Thymus	Thymus
10	chr10:18962400-18973600	Weak transcription	Fetal Intestine Small	intestine
11	chr10:18962400-18973600	Weak transcription	Fetal Stomach	stomach
12	chr10:18963200-18973400	Weak transcription	Pancreas	Pancrea
13	chr10:18964000-18973000	Weak transcription	Primary T cells from cord blood	blood
14	chr10:18964200-18973400	Weak transcription	Psoas Muscle	Psoas
15	chr10:18964600-18973600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:18964600-18973800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:18964800-18973400	Weak transcription	Fetal Brain Female	brain
18	chr10:18964800-18973400	Weak transcription	HUVEC	blood vessel
19	chr10:18964800-18973800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:18965000-18972800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:18965000-18973400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:18965200-18973400	Weak transcription	Brain Germinal Matrix	brain
23	chr10:18965200-18973400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:18965400-18973000	Weak transcription	Fetal Thymus	thymus
25	chr10:18966200-18972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:18966200-18973000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:18966200-18973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:18966200-18973400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:18966200-18976000	Weak transcription	HepG2	liver
30	chr10:18966600-18973200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:18966600-18973400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:18966600-18973400	Weak transcription	Primary B cells from cord blood	blood
33	chr10:18966600-18973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:18966600-18973400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:18966600-18974600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:18966800-18973400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:18967200-18973400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:18968000-18973200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:18968400-18978800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:18969800-18974200	Enhancers	Osteobl	bone
41	chr10:18969800-18974800	Enhancers	Hela-S3	cervix
42	chr10:18970000-18973000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr10:18970000-18973200	Enhancers	NHDF-Ad	bronchial
44	chr10:18970000-18974200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:18970200-18973000	Enhancers	Placenta Amnion	Placenta Amnion
46	chr10:18970200-18973000	Enhancers	HMEC	breast
47	chr10:18970200-18973200	Enhancers	NHLF	lung
48	chr10:18970400-18972800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:18970600-18972800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:18970800-18973000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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