Variant report

Variant	rs11511084
Chromosome Location	chr10:18864958-18864959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10508562	0.82[CHB][hapmap];0.95[YRI][hapmap]
rs10508563	0.81[JPT][hapmap]
rs1055116	0.89[JPT][hapmap]
rs10741091	0.81[JPT][hapmap]
rs10741111	0.94[JPT][hapmap]
rs10741115	0.95[JPT][hapmap]
rs10764582	0.90[JPT][hapmap]
rs10764600	0.83[ASN][1000 genomes]
rs10764601	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10764602	0.83[ASN][1000 genomes]
rs10764603	0.83[ASN][1000 genomes]
rs10764604	0.83[ASN][1000 genomes]
rs10764605	0.84[ASN][1000 genomes]
rs10764625	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10828851	0.85[JPT][hapmap]
rs10828870	0.90[JPT][hapmap]
rs10828871	0.89[JPT][hapmap]
rs10828896	0.95[JPT][hapmap]
rs10828965	0.83[ASN][1000 genomes]
rs10828975	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828983	0.83[ASN][1000 genomes]
rs10828991	0.81[ASN][1000 genomes]
rs10829009	0.81[ASN][1000 genomes]
rs10829022	0.95[JPT][hapmap]
rs10829037	0.84[JPT][hapmap]
rs10829058	0.94[JPT][hapmap]
rs10829070	0.95[JPT][hapmap]
rs11014981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015048	0.83[ASN][1000 genomes]
rs11015077	0.83[ASN][1000 genomes]
rs11015312	0.95[JPT][hapmap]
rs11015435	0.83[ASW][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap]
rs11525266	0.81[ASN][1000 genomes]
rs11540309	0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs11593617	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11597110	0.88[YRI][hapmap]
rs11812341	0.86[ASN][1000 genomes]
rs11815228	0.87[CHB][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12762481	0.83[ASW][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs12764334	0.83[AMR][1000 genomes]
rs12764398	0.81[AMR][1000 genomes]
rs12765238	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12766105	0.83[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12766314	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12767923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs12769425	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12770851	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12772009	0.88[CHB][hapmap];0.96[ASN][1000 genomes]
rs12772522	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12774519	0.88[ASN][1000 genomes]
rs12774593	0.82[CHB][hapmap];0.81[AMR][1000 genomes]
rs12775419	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12778035	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12779641	0.80[YRI][hapmap]
rs12779694	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12780652	0.84[ASN][1000 genomes]
rs12781208	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12784387	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs12784986	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs12785031	0.83[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.85[ASN][1000 genomes]
rs2130531	0.83[ASW][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap]
rs2171922	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs2228645	0.94[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs2272274	0.90[JPT][hapmap]
rs34237250	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34359432	0.87[ASN][1000 genomes]
rs3740102	0.89[JPT][hapmap]
rs3740104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs3817494	0.95[JPT][hapmap]
rs4237349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[ASN][1000 genomes]
rs4310518	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs4314963	0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap]
rs4445544	0.94[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4468242	0.83[ASW][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4573590	0.87[ASN][1000 genomes]
rs4575162	0.86[ASN][1000 genomes]
rs4628589	0.84[ASN][1000 genomes]
rs4747355	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4748481	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4748482	0.88[EUR][1000 genomes]
rs4748487	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4748488	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4748490	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4748492	0.84[ASN][1000 genomes]
rs4748496	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4748498	0.89[ASN][1000 genomes]
rs4748499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5022622	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs55927700	0.87[ASN][1000 genomes]
rs57579336	0.84[ASN][1000 genomes]
rs61663155	0.80[ASN][1000 genomes]
rs62636218	0.84[ASN][1000 genomes]
rs6482515	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs6482533	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6482597	0.95[JPT][hapmap]
rs7071300	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7072624	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7072963	0.83[ASW][hapmap];0.94[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.95[YRI][hapmap]
rs7074644	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7075135	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7077722	0.84[ASN][1000 genomes]
rs7081461	0.89[JPT][hapmap]
rs7085318	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7086757	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7088091	0.85[JPT][hapmap]
rs7089083	0.90[ASN][1000 genomes]
rs7093454	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7096923	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.95[YRI][hapmap]
rs7099260	0.95[JPT][hapmap]
rs7099423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs7100880	0.95[JPT][hapmap]
rs72787963	0.83[ASN][1000 genomes]
rs7894016	0.83[ASN][1000 genomes]
rs7895784	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7897159	0.94[CHB][hapmap];0.90[JPT][hapmap];0.80[TSI][hapmap];0.90[YRI][hapmap]
rs7898513	1.00[CEU][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs7904016	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7904263	0.83[ASN][1000 genomes]
rs7904949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7905365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7907891	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7909814	0.90[ASN][1000 genomes]
rs7919487	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7922550	0.85[JPT][hapmap]
rs7922829	0.85[JPT][hapmap]
rs7923480	0.90[JPT][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1835982	chr10:18833550-18872699	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv1845973	chr10:18841795-18872699	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv1793359	chr10:18841795-18872872	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv1801825	chr10:18853581-18872699	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
2	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
3	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
7	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
10	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
12	chr10:18849000-18868600	Weak transcription	Gastric	stomach
13	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:18853200-18866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:18859600-18868600	Weak transcription	K562	blood
18	chr10:18861000-18883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:18861600-18866200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:18861600-18867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:18861800-18869000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:18862000-18866200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:18862200-18865600	Weak transcription	Adipose Nuclei	Adipose
24	chr10:18862200-18866800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:18862200-18868800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:18862200-18894600	Weak transcription	HSMM	muscle
27	chr10:18862400-18865400	Weak transcription	Fetal Stomach	stomach
28	chr10:18862400-18865600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:18862400-18866000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:18862400-18866600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:18862400-18866600	Weak transcription	Fetal Intestine Large	intestine
32	chr10:18862400-18866800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:18862400-18866800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr10:18862400-18867000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:18862400-18878400	Strong transcription	Liver	Liver
36	chr10:18862600-18866200	Weak transcription	Dnd41	blood
37	chr10:18862600-18866800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:18862600-18866800	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:18862600-18869200	Weak transcription	Fetal Brain Male	brain
40	chr10:18862600-18876600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:18862800-18866200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:18862800-18866200	Weak transcription	Fetal Lung	lung
43	chr10:18863000-18867000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:18863000-18894600	Weak transcription	A549	lung
45	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:18863200-18865400	Weak transcription	Fetal Brain Female	brain
47	chr10:18863200-18866000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:18863200-18866600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:18863200-18866800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:18863200-18876400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links