Variant report

Variant	rs11015435
Chromosome Location	chr10:18948072-18948073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:18947237-18948983	HepG2	liver:	n/a	n/a
2	MAX	chr10:18947894-18948490	ECC-1	luminal epithelium:	n/a	n/a
3	STAT3	chr10:18947948-18948346	MCF10A-Er-Src	breast:	n/a	n/a
4	BRCA1	chr10:18947971-18948392	Hela-S3	cervix:	n/a	n/a
5	YY1	chr10:18948001-18948516	SK-N-SH_RA	brain:	n/a	chr10:18948488-18948502
6	USF1	chr10:18948003-18948361	SK-N-SH_RA	brain:	n/a	n/a
7	CEBPB	chr10:18948003-18948389	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr10:18947592-18948549	GM12878	blood:	n/a	n/a
9	BCL3	chr10:18947930-18948393	GM12878	blood:	n/a	n/a
10	ZNF384	chr10:18947783-18949244	K562	blood:	n/a	n/a
11	POLR2A	chr10:18946909-18949092	HepG2	liver:	n/a	n/a
12	MYC	chr10:18948038-18948453	MCF-7	breast:	n/a	n/a
13	MAX	chr10:18947976-18948452	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr10:18947846-18949208	H1-neurons	neurons:	n/a	n/a
15	POLR2A	chr10:18947134-18949376	GM12878	blood:	n/a	n/a
16	TCF3	chr10:18947862-18948257	GM12878	blood:	n/a	n/a
17	EGR1	chr10:18947999-18948345	GM12878	blood:	n/a	chr10:18948262-18948275 chr10:18948273-18948286 chr10:18948278-18948288
18	TCF12	chr10:18947868-18948695	ECC-1	luminal epithelium:	n/a	n/a
19	SIN3AK20	chr10:18947857-18948827	K562	blood:	n/a	n/a
20	TAF1	chr10:18947879-18948920	ECC-1	luminal epithelium:	n/a	n/a
21	SP1	chr10:18947905-18948411	GM12878	blood:	n/a	chr10:18948268-18948277 chr10:18948266-18948278 chr10:18948277-18948289 chr10:18948278-18948287 chr10:18948267-18948276 chr10:18948274-18948288 chr10:18948277-18948288 chr10:18948267-18948277 chr10:18948279-18948288 chr10:18948266-18948277 chr10:18948263-18948277
22	ELF1	chr10:18947838-18948517	MCF-7	breast:	n/a	n/a
23	POLR2A	chr10:18947127-18948557	HepG2	liver:	n/a	n/a
24	SIN3AK20	chr10:18947819-18949637	MCF-7	breast:	n/a	n/a
25	MYC	chr10:18947099-18949129	K562	blood:	n/a	n/a
26	YY1	chr10:18947829-18948726	GM12878	blood:	n/a	chr10:18948488-18948502 chr10:18948541-18948550
27	GABPA	chr10:18947796-18948574	SK-N-SH	brain:	n/a	n/a
28	USF1	chr10:18948051-18948338	A549	lung:	n/a	n/a
29	ZNF263	chr10:18947846-18949300	HEK293-T-REx	kidney:	n/a	n/a
30	MAX	chr10:18947870-18948492	MCF-7	breast:	n/a	n/a
31	FOSL2	chr10:18947708-18948266	A549	lung:	n/a	n/a
32	SP1	chr10:18947845-18948441	HepG2	liver:	n/a	chr10:18948268-18948277 chr10:18948266-18948278 chr10:18948277-18948289 chr10:18948278-18948287 chr10:18948267-18948276 chr10:18948274-18948288 chr10:18948277-18948288 chr10:18948267-18948277 chr10:18948279-18948288 chr10:18948266-18948277 chr10:18948263-18948277
33	GTF2F1	chr10:18947874-18948444	Hela-S3	cervix:	n/a	n/a
34	MAX	chr10:18947976-18948850	A549	lung:	n/a	n/a
35	GTF2F1	chr10:18947810-18948396	H1-hESC	embryonic stem cell:	n/a	n/a
36	USF1	chr10:18947915-18948425	A549	lung:	n/a	n/a
37	CHD1	chr10:18946998-18949474	GM12878	blood:	n/a	chr10:18948546-18948556 chr10:18948735-18948745
38	RELA	chr10:18947087-18949047	GM19099	blood:	n/a	n/a
39	FOS	chr10:18948009-18948274	MCF10A-Er-Src	breast:	n/a	n/a
40	SP1	chr10:18947857-18948770	GM12878	blood:	n/a	chr10:18948268-18948277 chr10:18948266-18948278 chr10:18948277-18948289 chr10:18948278-18948287 chr10:18948267-18948276 chr10:18948710-18948724 chr10:18948547-18948556 chr10:18948274-18948288 chr10:18948734-18948743 chr10:18948277-18948288 chr10:18948267-18948277 chr10:18948279-18948288 chr10:18948266-18948277 chr10:18948263-18948277
41	FOXM1	chr10:18947780-18948428	GM12878	blood:	n/a	n/a
42	RFX5	chr10:18947490-18948457	GM12878	blood:	n/a	n/a
43	MEF2A	chr10:18947804-18948498	GM12878	blood:	n/a	n/a
44	POLR2A	chr10:18946975-18949205	GM12892	blood:	n/a	n/a
45	MTA3	chr10:18947040-18948556	GM12878	blood:	n/a	n/a
46	ELK1	chr10:18947769-18948752	GM12878	blood:	n/a	n/a
47	POLR2A	chr10:18946806-18949630	K562	blood:	n/a	n/a
48	POLR2A	chr10:18947104-18949176	Raji	blood:	n/a	n/a
49	RELA	chr10:18947818-18948550	GM12892	blood:	n/a	n/a
50	TEAD4	chr10:18947875-18948436	ECC-1	luminal epithelium:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:18948058-18948108	HCPEpiC	choroid plexus:	n/a
2	chr10:18948058-18948108	MCF10A-Er-Src	breast:	n/a
3	chr10:18948058-18948108	SK-N-MC	brain:	n/a
4	chr10:18948058-18948108	HEK293	kidney:	embryo
5	chr10:18948058-18948108	Jurkat	blood:	n/a
6	chr10:18948058-18948108	GM12878	blood:	n/a
7	chr10:18948058-18948108	AoSMC	blood vessel:	n/a
8	chr10:18948058-18948108	HIPEpiC	eye:	n/a
9	chr10:18948058-18948108	CMK	blood:	n/a
10	chr10:18948058-18948108	HAEpiC	amniotic membrane:	n/a
11	chr10:18948058-18948108	ProgFib	skin:	n/a
12	chr10:18948058-18948108	HUVEC	blood vessel:	n/a
13	chr10:18948058-18948108	SK-N-SH_RA	brain:	n/a
14	chr10:18948058-18948108	GM12892	blood:	n/a
15	chr10:18948058-18948108	HPAEpiC	pulmonary alveolar:	n/a
16	chr10:18948058-18948108	HCT-116	colon:	n/a
17	chr10:18948058-18948108	IMR90	lung:	fetal
18	chr10:18948058-18948108	ovcar-3	ovarian:	n/a
19	chr10:18948058-18948108	PANC-1	pancreas:	n/a
20	chr10:18948058-18948108	NHDF-neo	bronchial:	n/a
21	chr10:18948058-18948108	BJ	skin:	n/a
22	chr10:18948058-18948108	Caco-2	colon:	n/a
23	chr10:18948058-18948108	HCF	heart:	n/a
24	chr10:18948058-18948108	ECC-1	luminal epithelium:	n/a
25	chr10:18948058-18948108	HL-60	blood:	n/a
26	chr10:18948058-18948108	SK-N-SH	brain:	n/a
27	chr10:18948058-18948108	H1-hESC	embryonic stem cell:	embryo
28	chr10:18948058-18948108	MCF-7	breast:	n/a
29	chr10:18948058-18948108	GM19239	blood:	n/a
30	chr10:18948058-18948108	NT2-D1	testis:	n/a
31	chr10:18948058-18948108	RPTEC	kidney:	n/a
32	chr10:18948058-18948108	HMEC	breast:	n/a
33	chr10:18948058-18948108	SAEC	small airway:	n/a
34	chr10:18948058-18948108	T-47D	breast:	n/a
35	chr10:18948058-18948108	HepG2	liver:	n/a
36	chr10:18948058-18948108	PFSK-1	brain:	n/a
37	chr10:18948058-18948108	HRPEpiC	eye:	n/a
38	chr10:18948058-18948108	AG09319	gingival:	n/a
39	chr10:18948058-18948108	AG04450	lung:	fetal
40	chr10:18948058-18948108	NH-A	brain:	n/a
41	chr10:18948058-18948108	AG09309	skin:	n/a
42	chr10:18948058-18948108	K562	blood:	n/a
43	chr10:18948058-18948108	PrEC	prostate:	n/a
44	chr10:18948058-18948108	AG10803	skin:	n/a
45	chr10:18948058-18948108	A549	lung:	n/a
46	chr10:18948058-18948108	Hepatocyte	liver:	n/a
47	chr10:18948058-18948108	HEEpiC	esophagus:	n/a
48	chr10:18948058-18948108	AG04449	skin:	fetal
49	chr10:18948058-18948108	HRCEpiC	kidney:	n/a
50	chr10:18948058-18948108	HRE	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:18938647..18942217-chr10:18945513..18950534,9	MCF-7	breast:
2	chr10:17271770..17274197-chr10:18946668..18948974,2	K562	blood:
3	chr10:18947486..18949622-chr7:100026064..100028896,2	MCF-7	breast:
4	chr10:18937279..18942257-chr10:18944156..18951752,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271786	TF binding region
ARL5B	TF binding region
ARL5B	CpG island
ENSG00000271786	CpG island
ENSG00000146834	Chromatin interaction
ENSG00000026025	Chromatin interaction
ENSG00000229124	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000241058	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1027193	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10508562	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[YRI][hapmap]
rs10508563	0.94[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs10829151	0.95[JPT][hapmap]
rs11014981	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs11015421	0.82[ASN][1000 genomes]
rs11511084	0.83[ASW][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap]
rs11540309	0.93[CEU][hapmap];0.83[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11593617	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11597110	0.88[YRI][hapmap]
rs11597737	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11812341	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11812501	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11815228	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12098599	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12762481	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12762752	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12764334	0.84[AMR][1000 genomes]
rs12764398	0.83[AMR][1000 genomes]
rs12765026	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12765238	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12766105	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12766314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12767046	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12767923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12768464	0.93[CEU][hapmap]
rs12769425	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12770851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12772009	0.92[CEU][hapmap];0.88[CHB][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12772522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12774519	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12774593	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes]
rs12775419	0.82[AMR][1000 genomes]
rs12778035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12778992	0.81[AMR][1000 genomes]
rs12779018	0.85[EUR][1000 genomes]
rs12779641	1.00[CEU][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap]
rs12779694	0.87[AMR][1000 genomes]
rs12780652	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12781208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12782882	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12784387	0.82[CHB][hapmap];0.90[YRI][hapmap]
rs12784555	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs12784711	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12784986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12785031	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1880681	1.00[CEU][hapmap]
rs2130531	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2171922	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2228645	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs34237250	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34359432	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35766272	0.82[AMR][1000 genomes]
rs3740102	0.84[JPT][hapmap]
rs3740104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4237349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4310518	0.82[ASW][hapmap];0.80[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4314963	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap]
rs4445544	0.83[CHB][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.91[YRI][hapmap]
rs4468242	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4573590	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4575162	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4628589	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4747355	0.84[AMR][1000 genomes]
rs4748481	0.81[CHB][hapmap]
rs4748487	0.84[AMR][1000 genomes]
rs4748490	0.85[AMR][1000 genomes]
rs4748496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4748497	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4748498	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4748499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55927700	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61663155	0.88[AMR][1000 genomes]
rs61842187	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482515	0.94[CHB][hapmap]
rs7071300	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7072624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7072963	1.00[ASW][hapmap];0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7074644	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7075135	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7085318	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7086757	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7089083	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7093454	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7096923	0.91[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7099423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7897159	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7904016	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7904949	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7905365	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7907891	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7909814	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7919487	0.84[AMR][1000 genomes]
rs7923480	0.80[CEU][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11015435	STAM	cis	parietal	SCAN
rs11015435	NSUN6	cis	parietal	SCAN
rs11015435	TAAR9	trans	cerebellum	SCAN
rs11015435	FAM188A	cis	cerebellum	SCAN
rs11015435	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18946600-18948400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:18946800-18949400	Active TSS	Liver	Liver
3	chr10:18946800-18949600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:18946800-18949600	Active TSS	Aorta	Aorta
5	chr10:18946800-18949600	Active TSS	Rectal Mucosa Donor 31	rectum
6	chr10:18946800-18949800	Active TSS	Fetal Intestine Small	intestine
7	chr10:18946800-18949800	Active TSS	NHDF-Ad	bronchial
8	chr10:18946800-18950600	Active TSS	GM12878-XiMat	blood
9	chr10:18947000-18949600	Active TSS	Stomach Mucosa	stomach
10	chr10:18947000-18949800	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr10:18947000-18949800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:18947000-18949800	Active TSS	Fetal Intestine Large	intestine
13	chr10:18947000-18949800	Active TSS	Psoas Muscle	Psoas
14	chr10:18947000-18949800	Active TSS	Right Atrium	heart
15	chr10:18947000-18950000	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr10:18947000-18950000	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr10:18947000-18950200	Active TSS	Colonic Mucosa	Colon
18	chr10:18947000-18950200	Active TSS	HSMM	muscle
19	chr10:18947000-18951200	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr10:18947200-18949600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr10:18947200-18949600	Active TSS	Ovary	ovary
22	chr10:18947200-18949800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:18947200-18949800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:18947200-18949800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:18947200-18949800	Active TSS	Fetal Kidney	kidney
26	chr10:18947200-18949800	Active TSS	Fetal Muscle Trunk	muscle
27	chr10:18947200-18949800	Active TSS	Pancreas	Pancrea
28	chr10:18947200-18949800	Active TSS	Right Ventricle	heart
29	chr10:18947200-18950000	Active TSS	Left Ventricle	heart
30	chr10:18947200-18950200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:18947200-18950400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:18947200-18950600	Active TSS	K562	blood
33	chr10:18947400-18948400	Active TSS	Brain Germinal Matrix	brain
34	chr10:18947400-18949000	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr10:18947400-18949000	Active TSS	Spleen	Spleen
36	chr10:18947400-18949400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:18947400-18949400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:18947400-18949400	Active TSS	Brain Hippocampus Middle	brain
39	chr10:18947400-18949400	Active TSS	Colon Smooth Muscle	Colon
40	chr10:18947400-18949400	Active TSS	Esophagus	oesophagus
41	chr10:18947400-18949400	Active TSS	Gastric	stomach
42	chr10:18947400-18949400	Active TSS	Lung	lung
43	chr10:18947400-18949400	Bivalent/Poised TSS	HepG2	liver
44	chr10:18947400-18949600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:18947400-18949600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr10:18947400-18949600	Active TSS	Fetal Brain Female	brain
47	chr10:18947400-18949600	Active TSS	Placenta	Placenta
48	chr10:18947400-18949600	Active TSS	A549	lung
49	chr10:18947400-18949800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:18947400-18949800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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