Variant report

Variant	rs61663155
Chromosome Location	chr10:18916398-18916399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18910399..18912492-chr10:18914485..18916630,2	MCF-7	breast:
2	chr10:18907737..18909748-chr10:18914983..18916871,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1027193	0.85[AMR][1000 genomes]
rs11015435	0.88[AMR][1000 genomes]
rs11511084	0.80[ASN][1000 genomes]
rs11540309	0.81[AMR][1000 genomes]
rs11597737	0.85[AMR][1000 genomes]
rs11812341	0.88[AMR][1000 genomes]
rs11812501	0.85[AMR][1000 genomes]
rs12098599	0.84[AMR][1000 genomes]
rs12762481	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12762752	0.88[AMR][1000 genomes]
rs12765026	0.84[AMR][1000 genomes]
rs12765238	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12766314	0.82[AMR][1000 genomes]
rs12767923	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12769425	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12770851	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12772009	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12772522	0.81[ASN][1000 genomes]
rs12774519	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12775419	0.81[ASN][1000 genomes]
rs12778035	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12779694	0.81[ASN][1000 genomes]
rs12780652	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12781208	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12782882	0.82[AMR][1000 genomes]
rs12784711	0.88[AMR][1000 genomes]
rs12784986	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12785031	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2130531	0.88[AMR][1000 genomes]
rs34237250	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34359432	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35766272	0.83[ASN][1000 genomes]
rs3740104	0.90[AMR][1000 genomes]
rs4237349	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4310518	0.86[AMR][1000 genomes]
rs4468242	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4573590	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4575162	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4628589	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747355	0.82[AMR][1000 genomes]
rs4748487	0.82[AMR][1000 genomes]
rs4748490	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4748496	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748497	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4748498	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748499	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55927700	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61842187	0.89[AMR][1000 genomes]
rs7071300	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7072624	0.81[AMR][1000 genomes]
rs7072963	0.84[AMR][1000 genomes]
rs7074644	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7075135	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7086757	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7089083	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7096923	0.84[AMR][1000 genomes]
rs7099423	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7904016	0.81[ASN][1000 genomes]
rs7904949	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7905365	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7909814	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7923480	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv982911	chr10:18911989-18931479	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3380756	chr10:18912943-18923066	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3392789	chr10:18915321-18925576	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61663155	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
3	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
4	chr10:18877600-18916400	Weak transcription	Gastric	stomach
5	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
6	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
7	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:18885400-18916400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:18891600-18916400	Weak transcription	Lung	lung
10	chr10:18895600-18916400	Weak transcription	Left Ventricle	heart
11	chr10:18896600-18916400	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:18896600-18916400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:18897200-18916400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:18898400-18916400	Weak transcription	Fetal Kidney	kidney
15	chr10:18898400-18916400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:18900000-18916600	Weak transcription	Stomach Mucosa	stomach
17	chr10:18900400-18916400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:18900600-18916400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:18900800-18916400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:18901200-18916400	Weak transcription	Esophagus	oesophagus
21	chr10:18901400-18916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:18901600-18916400	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:18902200-18916400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:18902400-18916400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:18902400-18916400	Weak transcription	Placenta	Placenta
26	chr10:18902400-18916400	Weak transcription	Fetal Thymus	thymus
27	chr10:18905000-18938200	Weak transcription	Hela-S3	cervix
28	chr10:18908400-18916400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:18910400-18916400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:18911200-18916400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:18911600-18916400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr10:18911600-18916400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr10:18911800-18916400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:18912600-18916400	Weak transcription	Fetal Intestine Small	intestine
35	chr10:18912800-18916400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:18912800-18916400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:18915200-18916400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:18915600-18916400	Enhancers	Fetal Heart	heart
39	chr10:18915600-18916400	Enhancers	HepG2	liver
40	chr10:18915800-18916400	Weak transcription	K562	blood
41	chr10:18915800-18917000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:18916000-18916400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr10:18916000-18916400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr10:18916000-18916400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:18916000-18916400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:18916000-18916400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:18916000-18916400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr10:18916000-18916400	Flanking Active TSS	Dnd41	blood
49	chr10:18916000-18916400	Flanking Active TSS	HUVEC	blood vessel
50	chr10:18916000-18916600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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